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Xndc1 Gene Detail
Summary
  • Symbol
    Xndc1
  • Name
    Xrcc1 N-terminal domain containing 1
  • Synonyms
    Xndr
  • Feature Type
    protein coding gene
  • IDs
    MGI:5546359
    NCBI Gene: 102443350
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:101714718-101732972 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    199 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5546359
 protein coding gene Chr7:101714698-101732972 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032598
 protein coding gene Chr7:105093236-105112927 (+)
A/J MGP_AJ_G0032574
 protein coding gene Chr7:102414092-102433267 (+)
AKR/J MGP_AKRJ_G0032510
 protein coding gene Chr7:104864923-104885057 (+)
BALB/cJ MGP_BALBcJ_G0032585
 protein coding gene Chr7:102108096-102127053 (+)
C3H/HeJ MGP_C3HHeJ_G0032299
 protein coding gene Chr7:105239313-105306268 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033082
 protein coding gene Chr7:109059963-109079160 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030076
 protein coding gene Chr7:104770841-104788324 (+)
CAST/EiJ MGP_CASTEiJ_G0031625
 protein coding gene Chr7:96802059-96821997 (+)
CBA/J MGP_CBAJ_G0032265
 protein coding gene Chr7:112833135-112854947 (+)
DBA/2J MGP_DBA2J_G0032417
 protein coding gene Chr7:100739669-100758877 (+)
FVB/NJ MGP_FVBNJ_G0032373
 protein coding gene Chr7:100526942-100545494 (+)
LP/J MGP_LPJ_G0032506
 protein coding gene Chr7:106407497-106425653 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032407
 protein coding gene Chr7:114148662-114169262 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033104
 protein coding gene Chr7:104138549-104157453 (+)
PWK/PhJ MGP_PWKPhJ_G0031343
 protein coding gene Chr7:93858175-93877909 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031187
 protein coding gene Chr7:91433255-91451529 (+)
WSB/EiJ MGP_WSBEiJ_G0031742
 protein coding gene Chr7:104826346-104845268 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    19 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    2
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Xndc1
  • Find Mice (IMSR)
    19 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000099481 Ensembl Gene Model | MGI Sequence Detail 18255 C57BL/6J ±  kb
transcript ENSMUST00000106950 Ensembl | MGI Sequence Detail 3131 Not Applicable  
polypeptide ENSMUSP00000102563 Ensembl | MGI Sequence Detail 405 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 27
    Phenotypes 19
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory