Gm20560 Gene Detail

Summary

• Symbol
  Gm20560
• Name
  predicted gene, 20560
• Synonyms
  Gm44031

• Feature Type
  lncRNA gene
• IDs
  MGI:5295667
  NCBI Gene: 330354
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:72989026-72997343 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 32.37 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5295667	lncRNA gene	Chr6:72988896-73010520 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004291	antisense lncRNA gene	Chr6:73630875-73641229 (+)
A/J	MGP_AJ_G0004269	antisense lncRNA gene	Chr6:70714936-70723778 (+)
AKR/J	MGP_AKRJ_G0004250	antisense lncRNA gene	Chr6:72845145-72853250 (+)
BALB/cJ	MGP_BALBcJ_G0004256	antisense lncRNA gene	Chr6:70772417-70780889 (+)
C3H/HeJ	MGP_C3HHeJ_G0004249	antisense lncRNA gene	Chr6:111398495-111408732 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004405	antisense lncRNA gene	Chr6:75535059-75543343 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003878	antisense lncRNA gene	Chr6:69896199-69904174 (+)
CAST/EiJ	MGP_CASTEiJ_G0004166	antisense lncRNA gene	Chr6:72721295-72730363 (+)
CBA/J	MGP_CBAJ_G0004198	antisense lncRNA gene	Chr6:78652226-78660467 (+)
DBA/2J	MGP_DBA2J_G0004214	antisense lncRNA gene	Chr6:70135186-70143754 (+)
FVB/NJ	MGP_FVBNJ_G0004229	antisense lncRNA gene	Chr6:69531522-69539816 (+)
LP/J	MGP_LPJ_G0004292	antisense lncRNA gene	Chr6:73527372-73535438 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004220	antisense lncRNA gene	Chr6:81990008-81999679 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004402	antisense lncRNA gene	Chr6:72670294-72679358 (+)
PWK/PhJ	MGP_PWKPhJ_G0004119	antisense lncRNA gene	Chr6:69067535-69076626 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004063	antisense lncRNA gene	Chr6:71425686-71433698 (+)
WSB/EiJ	MGP_WSBEiJ_G0004202	antisense lncRNA gene	Chr6:73046009-73054138 (+)

Homology

• Gene Tree
  Gm20560
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  2
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm20560
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000107546 (Evidence)
• NCBI Gene
  330354

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107546	Ensembl Gene Model | MGI Sequence Detail	8318	C57BL/6J
transcript	ENSMUST00000204577	Ensembl | MGI Sequence Detail	3513	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5690423

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)