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Trav13d-4 Gene Detail
Summary
  • Symbol
    Trav13d-4
  • Name
    T cell receptor alpha variable 13D-4
  • Synonyms
    Gm17006
  • Feature Type
    gene segment
  • IDs
    MGI:4440515
    NCBI Gene: 639655
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:53310220-53310731 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.21 cM
Strain
Comparison
more
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4440515
 gene segment Chr14:53310220-53310732 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002551
 gene segment Chr14:47289145-47289656 (+)
A/J MGP_AJ_G0002534
 gene segment Chr14:46754687-46754965 (+)
AKR/J MGP_AKRJ_G0002504
 gene segment Chr14:47921736-48448381 (+)
BALB/cJ MGP_BALBcJ_G0002519
 gene segment Chr14:46739514-46739792 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0002486
 gene segment Chr14:51560521-51560799 (+)
DBA/2J MGP_DBA2J_G0002490
 gene segment Chr14:46486697-46491644 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0002567
 gene segment Chr14:48687955-48688466 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0002671
 gene segment Chr14:47627548-47628059 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV22, T cell receptor alpha variable 22
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV22, T cell receptor alpha variable 22
  • Synonyms
    TCRAV13S1, TCRAV22S1
  • Links
    NCBI Gene ID: 28661
    UniProt: A0A0B4J277

  • Chr Location
    14q11.2; chr14:22070557-22071208 (+)  GRCh38
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    19
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000096329 Ensembl Gene Model | MGI Sequence Detail 512 C57BL/6J ±  kb
transcript ENSMUST00000196079 Ensembl | MGI Sequence Detail 331 Not Applicable  
polypeptide ENSMUSP00000143340 Ensembl | MGI Sequence Detail 110 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 7
  • Earliest
    J:30476 Takagaki Y, et al., T cell receptor-gamma and -delta genes preferentially utilized by adult thymocytes for the surface expression. J Immunol. 1989 Mar 15;142(6):2112-21
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory