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Ighv6-6 Gene Detail
Summary
  • Symbol
    Ighv6-6
  • Name
    immunoglobulin heavy variable 6-6
  • Synonyms
    Gm16695
  • Feature Type
    gene segment
  • IDs
    MGI:4439619
    NCBI Gene: 238427
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:114398408-114398707 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 12, 62.37 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    150 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439619
gene segment Chr12:114398408-114398864 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0000076
gene segment Chr12:112627123-112627579 (-)
AKR/J MGP_AKRJ_G0000075
gene segment Chr12:115910519-115910975 (-)
BALB/cJ MGP_BALBcJ_G0000071
gene segment Chr12:113143534-113143990 (-)
C3H/HeJ MGP_C3HHeJ_G0000073
gene segment Chr12:116271819-116272275 (-)
C57BL/6NJ MGP_C57BL6NJ_G0000096
gene segment Chr12:120717294-120717750 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000050
gene segment Chr12:108965238-108988324 (-)
CAST/EiJ MGP_CASTEiJ_G0000072
gene segment Chr12:111093530-111093986 (-)
CBA/J MGP_CBAJ_G0000071
gene segment Chr12:125285084-125285540 (-)
DBA/2J MGP_DBA2J_G0000075
gene segment Chr12:112171079-112171535 (-)
FVB/NJ MGP_FVBNJ_G0000069
gene segment Chr12:110865035-110865491 (-)
LP/J MGP_LPJ_G0000077
gene segment Chr12:117047488-117047944 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000077
gene segment Chr12:128558659-128559115 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000089
gene segment Chr12:115316365-115316821 (-)
PWK/PhJ MGP_PWKPhJ_G0000061
gene segment Chr12:106793175-106811456 (-)
SPRET/EiJ MGP_SPRETEiJ_G0000055
gene segment Chr12:109576497-109597862 (-)
WSB/EiJ MGP_WSBEiJ_G0000071
gene segment Chr12:116332089-116332545 (-)



Homology
more
  • Human Ortholog
    IGHV3-73, immunoglobulin heavy variable 3-73
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGHV3-73, immunoglobulin heavy variable 3-73
  • Synonyms
    IGHV373, VH
  • Links
    NCBI Gene ID: 28409
    UniProt: A0A0B4J1V6

  • Chr Location
    14q32.33; chr14:106802692-106803233 (-)  GRCh38

Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 238427 NCBI Gene Model | MGI Sequence Detail 300 C57BL/6J ±  kb
transcript AB050074 GenBank | ENA | DDBJ | MGI Sequence Detail 477 BALB/c  
polypeptide A0A075B5T3 UniProt | EBI | MGI Sequence Detail 119 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 6
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory