Gm15270 Gene Detail

Summary

• Symbol
  Gm15270
• Name
  predicted gene 15270

• Feature Type
  lncRNA gene
• IDs
  MGI:3705149
  NCBI Gene: 102638890
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:24425063-24473006 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 11.82 cM

Strain
Comparison

• SNPs within 2kb
  402 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705149	lncRNA gene	Chr10:24207586-24473006 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015132	unclassified non-coding RNA gene	Chr10:22525147-22578016 (-)
A/J	MGP_AJ_G0015106	unclassified non-coding RNA gene	Chr10:21867187-21916314 (-)
AKR/J	MGP_AKRJ_G0015069	unclassified non-coding RNA gene	Chr10:22227635-22277256 (-)
BALB/cJ	MGP_BALBcJ_G0015069	unclassified non-coding RNA gene	Chr10:21966487-22013087 (-)
C3H/HeJ	MGP_C3HHeJ_G0014892	unclassified non-coding RNA gene	Chr10:22435028-22485186 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015525	unclassified non-coding RNA gene	Chr10:23228251-23275070 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013271	unclassified non-coding RNA gene	Chr10:20560117-20612509 (-)
CAST/EiJ	MGP_CASTEiJ_G0014446	unclassified non-coding RNA gene	Chr10:22370917-22425490 (-)
CBA/J	MGP_CBAJ_G0014871	unclassified non-coding RNA gene	Chr10:24268676-24317637 (-)
DBA/2J	MGP_DBA2J_G0014964	unclassified non-coding RNA gene	Chr10:21598832-21646892 (-)
FVB/NJ	MGP_FVBNJ_G0014975	unclassified non-coding RNA gene	Chr10:21305443-21352581 (-)
LP/J	MGP_LPJ_G0015046	unclassified non-coding RNA gene	Chr10:22514284-22567228 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015002	unclassified non-coding RNA gene	Chr10:24392063-24439268 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015564	unclassified non-coding RNA gene	Chr10:22090478-22141522 (-)
PWK/PhJ	MGP_PWKPhJ_G0014238	unclassified non-coding RNA gene	Chr10:21371477-21428262 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014026	unclassified non-coding RNA gene	Chr10:21902102-21956789 (-)
WSB/EiJ	MGP_WSBEiJ_G0014549	unclassified non-coding RNA gene	Chr10:22211493-22261537 (-)

Homology

• Gene Tree
  Gm15270
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  1
• Gene trapped
  7
• Genomic Mutations
  1 involving Gm15270
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  10 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000087400 (Evidence)
• NCBI Gene
  102638890

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087400	Ensembl Gene Model | MGI Sequence Detail	47944	C57BL/6J
transcript	ENSMUST00000246939	Ensembl | MGI Sequence Detail	948	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 9
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm15270:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97068	Chr10:24471695-24471707 (-)	1,305 bp
Tssr97067	Chr10:24466504-24466511 (-)	6,498 bp
Tssr97066	Chr10:24464679-24464682 (-)	8,325 bp