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Ighv6-4 Gene Detail
Summary
  • Symbol
    Ighv6-4
  • Name
    immunoglobulin heavy variable V6-4
  • Feature Type
    gene segment
  • IDs
    MGI:3704120
    NCBI Gene: 628398
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:114406474-114406773 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 62.37 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    175 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704120
gene segment Chr12:114406474-114406961 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0000074
gene segment Chr12:112592761-112593071 (-)
AKR/J MGP_AKRJ_G0000074
gene segment Chr12:115866903-115869603 (-)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0000071
gene segment Chr12:116230841-116236341 (-)
C57BL/6NJ MGP_C57BL6NJ_G0000094
gene segment Chr12:120683504-120683991 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000049
gene segment Chr12:108965238-108988177 (-)
CAST/EiJ MGP_CASTEiJ_G0000071
gene segment Chr12:111093530-111093840 (-)
CBA/J MGP_CBAJ_G0000069
gene segment Chr12:125237529-125239604 (-)
DBA/2J MGP_DBA2J_G0000073
gene segment Chr12:112145755-112146222 (-)
FVB/NJ MGP_FVBNJ_G0000067
gene segment Chr12:110836623-110837120 (-)
LP/J MGP_LPJ_G0000078
gene segment Chr12:117047488-117047798 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000075
gene segment Chr12:128527891-128528378 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000087
gene segment Chr12:115278923-115279568 (-)
PWK/PhJ MGP_PWKPhJ_G0000062
gene segment Chr12:106793175-106811310 (-)
SPRET/EiJ MGP_SPRETEiJ_G0000056
gene segment Chr12:109576497-109597716 (-)
WSB/EiJ MGP_WSBEiJ_G0000072
gene segment Chr12:116332089-116332399 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 628398 NCBI Gene Model | MGI Sequence Detail 300 C57BL/6J ±  kb
polypeptide A0A0A6YX19 UniProt | EBI | MGI Sequence Detail 119 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 7
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory