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Trav15-2-dv6-2 Gene Detail
Summary
  • Symbol
    Trav15-2-dv6-2
  • Name
    T cell receptor alpha variable 15-2-DV6-2
  • Synonyms
    Trav15-2/dv6-2
  • Feature Type
    gene segment
  • IDs
    MGI:3702147
    NCBI Gene: 436545
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:53649425-53649994 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.46 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3702147
gene segment Chr14:53649404-53649994 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002562
gene segment Chr14:47569256-47569846 (+)
A/J MGP_AJ_G0002533
gene segment Chr14:46609203-46609793 (+)
AKR/J MGP_AKRJ_G0002525
gene segment Chr14:48305775-48306368 (+)
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002657
gene segment Chr14:49973820-49974410 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002468
gene segment Chr14:44291996-44292586 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0002487
gene segment Chr14:45883155-45883748 (+)
FVB/NJ MGP_FVBNJ_G0002499
gene segment Chr14:45453010-45453684 (+)
LP/J MGP_LPJ_G0002562
gene segment Chr14:48534729-48535322 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002473
gene segment Chr14:50406954-50407547 (+)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002376
gene segment Chr14:43275990-43276289 (-)
WSB/EiJ no annotation



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 436545 NCBI Gene Model | MGI Sequence Detail 570 C57BL/6J ±  kb
polypeptide A0A075B650 UniProt | EBI | MGI Sequence Detail 123 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less

  • Microarray probesets 3
References
more
  • Summaries
    All 11
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/20/2020
MGI 6.16
The Jackson Laboratory