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Spocd1 Gene Detail
Summary
  • Symbol
    Spocd1
  • Name
    SPOC domain containing 1
  • Synonyms
    OTTMUSG00000009522
  • Feature Type
    protein coding gene
  • IDs
    MGI:3652045
    NCBI Gene: 622480
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr4:129929249-129957115 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 63.43 cM
Strain
Comparison
more
  • SNPs within 2kb
    271 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3652045
protein coding gene Chr4:129928767-129957115 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028840
protein coding gene Chr4:131908160-131935851 (+)
A/J MGP_AJ_G0028799
protein coding gene Chr4:126616290-126645115 (+)
AKR/J MGP_AKRJ_G0028752
protein coding gene Chr4:130157327-130189591 (+)
BALB/cJ MGP_BALBcJ_G0028822
protein coding gene Chr4:127224962-127254585 (+)
C3H/HeJ MGP_C3HHeJ_G0028536
protein coding gene Chr4:130239701-130249098 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029264
protein coding gene Chr4:136853057-136880613 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026536
protein coding gene Chr4:119740764-119769814 (+)
CAST/EiJ MGP_CASTEiJ_G0027968
protein coding gene Chr4:128404867-128436691 (+)
CBA/J MGP_CBAJ_G0028502
protein coding gene Chr4:140322489-140353090 (+)
DBA/2J MGP_DBA2J_G0028651
protein coding gene Chr4:127051567-127079956 (+)
FVB/NJ MGP_FVBNJ_G0028618
protein coding gene Chr4:125830026-125862941 (+)
LP/J MGP_LPJ_G0028752
protein coding gene Chr4:132200511-132256444 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028644
protein coding gene Chr4:145044228-145071765 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029302
protein coding gene Chr4:130524273-130557286 (+)
PWK/PhJ MGP_PWKPhJ_G0027690
protein coding gene Chr4:123662633-123690733 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027516
protein coding gene Chr4:126406183-126434321 (+)
WSB/EiJ MGP_WSBEiJ_G0028049
protein coding gene Chr4:130666822-130697399 (+)



Homology
more
  • Human Ortholog
    SPOCD1, SPOC domain containing 1
  • Vertebrate Orthologs
    6
  • Human Ortholog
    SPOCD1, SPOC domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PPP1R146
  • Links
    NCBI Gene ID: 90853
    neXtProt AC: NX_Q6ZMY3
    UniProt: Q6ZMY3

  • Chr Location
    1p35.2; chr1:31790422-31816051 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028784 Ensembl Gene Model | MGI Sequence Detail 27867 C57BL/6J ±  kb
transcript ENSMUST00000084263 Ensembl | MGI Sequence Detail 3096 Not Applicable  
polypeptide ENSMUSP00000081284 Ensembl | MGI Sequence Detail 936 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • InterPro Domains
    IPR012921 Spen paralogue and orthologue SPOC, C-terminal
    IPR003618 Transcription elongation factor S-II, central domain
    IPR036575 Transcription elongation factor S-II, central domain superfamily
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory