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Trav6d-3 Gene Detail
Summary
  • Symbol
    Trav6d-3
  • Name
    T cell receptor alpha variable 6D-3
  • Feature Type
    gene segment
  • IDs
    MGI:3650097
    NCBI Gene: 627394
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:52962765-52964376 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.06 cM
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650097
 gene segment Chr14:52962756-52964376 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002527
 gene segment Chr14:46768257-46769884 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002484
 gene segment Chr14:47211678-47213302 (+)
BALB/cJ MGP_BALBcJ_G0002513
 gene segment Chr14:46375328-46376955 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0002221
 gene segment Chr14:44583508-44583799 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0002459
 gene segment Chr14:50340007-50341634 (+)
DBA/2J MGP_DBA2J_G0002468
 gene segment Chr14:45318066-45319690 (+)
FVB/NJ MGP_FVBNJ_G0002482
 gene segment Chr14:44892203-44893946 (+)
LP/J MGP_LPJ_G0002523
 gene segment Chr14:47418319-47419943 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002345
 gene segment Chr14:42591335-42592964 (+)
WSB/EiJ MGP_WSBEiJ_G0002462
 gene segment Chr14:46860607-46862235 (+)



Homology
more
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Synonyms
    TCRAV22S1, TCRAV9S2, TRAV92
  • Links
    NCBI Gene ID: 28677
    UniProt: A0A087WT02

  • Chr Location
    14q11.2; chr14:21941128-21941657 (+)  GRCh38
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 627394 NCBI Gene Model | MGI Sequence Detail 1612 C57BL/6J ±  kb
polypeptide A0A075B6B3 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 7
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory