Gm13294 Pseudogene Detail

Summary

• Symbol
  Gm13294
• Name
  predicted gene 13294

• Feature Type
  pseudogene
• IDs
  MGI:3649472
  NCBI Gene: 667192
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:11103744-11105073 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 8.34 cM

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649472	pseudogene	Chr2:11103430-11105168 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0010479	pseudogene	Chr10:1289795-1291061 (-)
AKR/J	MGP_AKRJ_G0011485	pseudogene	Chr2:8402045-8405782 (-)
BALB/cJ	MGP_BALBcJ_G0011500	pseudogene	Chr2:8107281-8108706 (-)
C3H/HeJ	MGP_C3HHeJ_G0010384	pseudogene	Chr10:1374311-1377008 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010725	pseudogene	Chr10:1387293-1388564 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009399	pseudogene	Chr10:1117255-1118430 (-)
CAST/EiJ	MGP_CASTEiJ_G0010202	pseudogene	Chr10:1412052-1413227 (-)
CBA/J	MGP_CBAJ_G0010350	pseudogene	Chr10:1437820-1438981 (-)
DBA/2J	MGP_DBA2J_G0011415	pseudogene	Chr2:8050028-8051720 (-)
FVB/NJ	MGP_FVBNJ_G0010405	pseudogene	Chr10:1251271-1252545 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0011415	pseudogene	Chr2:8987874-8989327 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011778	pseudogene	Chr2:8333247-8336666 (-)
PWK/PhJ	MGP_PWKPhJ_G0010105	pseudogene	Chr10:1292722-1293897 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009920	pseudogene	Chr10:1471019-1474318 (-)
WSB/EiJ	MGP_WSBEiJ_G0011210	pseudogene	Chr2:8415961-8420642 (-)

Homology

• Gene Tree
  Gm13294
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000083900 (Evidence)
• NCBI Gene
  667192

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083900	Ensembl Gene Model | MGI Sequence Detail	1330	C57BL/6J
transcript	ENSMUST00000121757	Ensembl | MGI Sequence Detail	1330	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;