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Trav19 Gene Detail
Summary
  • Symbol
    Trav19
  • Name
    T cell receptor alpha variable 19
  • Synonyms
    Gm13893
  • Feature Type
    gene segment
  • IDs
    MGI:3649383
    NCBI Gene: 547428
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:54082779-54083284 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.54 cM
Strain
Comparison
more
  • SNPs within 2kb
    48 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649383
 gene segment Chr14:54082691-54083284 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002568
 gene segment Chr14:47768053-47768646 (+)
A/J MGP_AJ_G0002539
 gene segment Chr14:46870815-46871408 (+)
AKR/J MGP_AKRJ_G0002530
 gene segment Chr14:48563294-48563887 (+)
BALB/cJ MGP_BALBcJ_G0002525
 gene segment Chr14:46838709-46839302 (+)
C3H/HeJ MGP_C3HHeJ_G0002492
 gene segment Chr14:48243192-48243785 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002666
 gene segment Chr14:50206688-50207281 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002236
 gene segment Chr14:45303593-45304234 (+)
CAST/EiJ MGP_CASTEiJ_G0002478
 gene segment Chr14:44492791-44493384 (+)
CBA/J MGP_CBAJ_G0002491
 gene segment Chr14:51698483-51699076 (+)
DBA/2J MGP_DBA2J_G0002495
 gene segment Chr14:46594529-46595122 (+)
FVB/NJ MGP_FVBNJ_G0002523
 gene segment Chr14:46077574-46078167 (+)
LP/J MGP_LPJ_G0002574
 gene segment Chr14:48791667-48792260 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002498
 gene segment Chr14:51135907-51136500 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002676
 gene segment Chr14:47750815-47751408 (+)
PWK/PhJ MGP_PWKPhJ_G0002437
 gene segment Chr14:43142914-43143507 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002389
 gene segment Chr14:43731937-43732530 (+)
WSB/EiJ MGP_WSBEiJ_G0002493
 gene segment Chr14:48050827-48051422 (+)



Homology
more
  • Human Ortholog
    TRAV29DV5, T cell receptor alpha variable 29/delta variable 5
  • Vertebrate Orthologs
    7
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV29DV5, T cell receptor alpha variable 29/delta variable 5
  • Synonyms
    hADV29S1, TCRA, TCRAV21S1, TRAV29/DV5
  • Links
    NCBI Gene ID: 28653
    UniProt: P04437

  • Chr Location
    14q11.2; chr14:22163238-22163870 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 547428 NCBI Gene Model | MGI Sequence Detail 506 C57BL/6J ±  kb
transcript X72904 GenBank | ENA | DDBJ | MGI Sequence Detail 519 BALB/c  
polypeptide A0A0B4J1K4 UniProt | EBI | MGI Sequence Detail 119 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less

  • Microarray probesets 2
References
more
  • Summaries
    All 15
    Gene Ontology 1
  • Earliest
    J:15520 Marche PN, et al., T cell receptor V alpha gene segment with alternate splicing in the junctional region. J Immunol. 1993 Nov 15;151(10):5319-27
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory