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Gm5546 Gene Detail
Summary
  • Symbol
    Gm5546
  • Name
    predicted gene 5546
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3648205
    NCBI Gene: 433634
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr3:104258782-104267634 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 45.57 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    74 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648205
 lncRNA gene Chr3:104257951-104273929 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006266
 lincRNA gene Chr3:105649385-105665350 (-)
A/J MGP_AJ_G0006259
 lincRNA gene Chr3:102292982-102308960 (-)
AKR/J MGP_AKRJ_G0006235
 lincRNA gene Chr3:104804969-104820955 (-)
BALB/cJ MGP_BALBcJ_G0006233
 lincRNA gene Chr3:102069083-102085541 (-)
C3H/HeJ MGP_C3HHeJ_G0006185
 lincRNA gene Chr3:105168320-105184298 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006398
 lincRNA gene Chr3:109579106-109595042 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005697
 lincRNA gene Chr3:98419125-98434838 (-)
CAST/EiJ MGP_CASTEiJ_G0006119
 lincRNA gene Chr3:104294841-104310813 (-)
CBA/J MGP_CBAJ_G0006169
 lincRNA gene Chr3:113326185-113342163 (-)
DBA/2J MGP_DBA2J_G0006190
 lincRNA gene Chr3:101543515-101559710 (-)
FVB/NJ MGP_FVBNJ_G0006211
 lincRNA gene Chr3:99472908-99488895 (-)
LP/J MGP_LPJ_G0006271
 lincRNA gene Chr3:107004852-107020817 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006202
 lincRNA gene Chr3:119465092-119481397 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006404
 lincRNA gene Chr3:104361979-104378626 (-)
PWK/PhJ MGP_PWKPhJ_G0006059
 lincRNA gene Chr3:101324725-101343852 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005970
 lincRNA gene Chr3:102400024-102416037 (-)
WSB/EiJ MGP_WSBEiJ_G0006166
 lincRNA gene Chr3:104921532-104940964 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    719
  • Tissues
    3
  • cDNA Data
    3
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 433634 NCBI Gene Model | MGI Sequence Detail 8853 C57BL/6J ±  kb
transcript AK044520 GenBank | ENA | DDBJ | MGI Sequence Detail 2783 C57BL/6J  
polypeptide Q8C8T4 UniProt | EBI | MGI Sequence Detail 100 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
References
more
  • Summaries
    All 15
    Developmental Gene Expression 1
    Diseases 1
    Phenotypes 6
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory