Rpl21-ps4 Pseudogene Detail

Summary

• Symbol
  Rpl21-ps4
• Name
  ribosomal protein L21, pseudogene 4
• Synonyms
  Gm5201

• Feature Type
  pseudogene
• IDs
  MGI:3646825
  NCBI Gene: 382843
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:11241784-11242221 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 6.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646825	pseudogene	Chr14:11241748-11242260 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0020996	protein coding gene	Chr14:3585672-3586111 (+)
A/J	MGP_AJ_G0020944	protein coding gene	Chr14:3529780-3533831 (+)
AKR/J	MGP_AKRJ_G0020921	protein coding gene	Chr14:3573215-3577191 (+)
BALB/cJ	MGP_BALBcJ_G0020947	protein coding gene	Chr14:3519916-3524011 (+)
C3H/HeJ	MGP_C3HHeJ_G0020731	protein coding gene	Chr14:3616016-3616455 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0021380	protein coding gene	Chr14:3717442-3717900 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018949	protein coding gene	Chr14:4299022-4299457 (+)
CAST/EiJ	MGP_CASTEiJ_G0020253	protein coding gene	Chr14:3590983-3591423 (+)
CBA/J	MGP_CBAJ_G0020697	protein coding gene	Chr14:3827363-3827802 (+)
DBA/2J	MGP_DBA2J_G0020820	protein coding gene	Chr14:3480206-3480645 (+)
FVB/NJ	MGP_FVBNJ_G0020802	protein coding gene	Chr14:3448199-3448639 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0020828	protein coding gene	Chr14:3919121-3919561 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0021413	protein coding gene	Chr14:3535235-3535675 (+)
PWK/PhJ	MGP_PWKPhJ_G0020005	protein coding gene	Chr14:3504087-3504526 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0020311	protein coding gene	Chr14:3586490-3588487 (+)

Homology

• Gene Tree
  Rpl21-ps4
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000072714 (Evidence)
• NCBI Gene
  382843

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072714	Ensembl Gene Model | MGI Sequence Detail	438	C57BL/6J
transcript	ENSMUST00000080237	Ensembl | MGI Sequence Detail	438	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Rpl21-ps4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124257	Chr14:11242259-11242262 (-)	-40 bp