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A230006K03Rik Gene Detail
Summary
  • Symbol
    A230006K03Rik
  • Name
    RIKEN cDNA A230006K03 gene
  • Synonyms
    CAG-3, CAG-8, D0Kist2, EG330549, Gm31445, Gm7414
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3644205
    NCBI Gene: 27493
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:60852699-60961469 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, Syntenic
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    783 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644205
 lncRNA gene Chr7:60844731-60961469 (-)
129S1/SvImJ MGP_129S1SvImJ_G0007176
 lincRNA gene Chr7:62124766-62337361 (-)
A/J MGP_AJ_G0007172
 lincRNA gene Chr7:60982601-61175340 (-)
AKR/J MGP_AKRJ_G0007142
 lincRNA gene Chr7:62272355-62465210 (-)
BALB/cJ MGP_BALBcJ_G0007151
 lincRNA gene Chr7:60602832-60787244 (-)
C3H/HeJ MGP_C3HHeJ_G0007094
 lincRNA gene Chr7:62815529-63007005 (-)
C57BL/6NJ MGP_C57BL6NJ_G0007320
 lincRNA gene Chr7:64843883-65052661 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0007077
 lincRNA gene Chr7:66918031-67138977 (-)
DBA/2J MGP_DBA2J_G0007098
 lincRNA gene Chr7:59859466-60062623 (-)
FVB/NJ MGP_FVBNJ_G0007121
 lincRNA gene Chr7:59869802-60053323 (-)
LP/J MGP_LPJ_G0007180
 lincRNA gene Chr7:63324931-63533655 (-)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0007323
 lincRNA gene Chr7:61533142-61732578 (-)
PWK/PhJ MGP_PWKPhJ_G0006939
 lincRNA gene Chr7:52861096-53037478 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0007058
 lincRNA gene Chr7:61899145-62096950 (-)



Homology
less
Human Diseases
less
  • References
    4 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    33 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    1
  • Transgenic
    1
  • Genomic Mutations
    4 involving A230006K03Rik
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    826
  • Tissues
    31
  • cDNA Data
    9
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000068151 Ensembl Gene Model | MGI Sequence Detail 108771 C57BL/6J ±  kb
transcript ENSMUST00000247536 Ensembl | MGI Sequence Detail 3111 Not Applicable  
polypeptide Q9D6J0 UniProt | EBI | MGI Sequence Detail 193 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 12
    cDNA 9
    Primer pair 3

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-37483, MGI:108439, MGI:3647906, MGI:5590604
References
more
  • Summaries
    All 51
    Developmental Gene Expression 2
    Diseases 4
    Gene Ontology 1
    Phenotypes 33
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:335224 Nakai N, et al., Virtual reality-based real-time imaging reveals abnormal cortical dynamics during behavioral transitions in a mouse model of autism. Cell Rep. 2023 Mar 24;:112258
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory