Ighv1-71 Gene Detail

Summary

• Symbol
  Ighv1-71
• Name
  immunoglobulin heavy variable 1-71

• Feature Type
  gene segment
• IDs
  MGI:3643033
  NCBI Gene: 619886
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:115705825-115706126 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643033	gene segment	Chr12:115705825-115706267 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000100	gene segment	Chr12:118841984-118842416 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0000086	gene segment	Chr12:114915214-114915646 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0000131	gene segment	Chr12:122256127-122256569 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000097	gene segment	Chr12:112070275-112070708 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0000087	gene segment	Chr12:112548054-112548347 (-)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0000117	gene segment	Chr12:116846645-116847086 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0000094	gene segment	Chr12:118083422-118083855 (-)

Homology

• Human Ortholog
  IGHV1-24, immunoglobulin heavy variable 1-24

• Vertebrate Orthologs
  6

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  IGHV1-24, immunoglobulin heavy variable 1-24
  
• Synonyms
  IGHV124, VH
• Links
  HGNC:5551

  NCBI Gene ID: 28467

  UniProt: A0A0C4DH33

  
  
• Chr Location
  14q32.33; chr14:106276546-106276983 (-)  GRCh38.p7

---

• Human Ortholog
  IGHV1-45, immunoglobulin heavy variable 1-45
  
• Synonyms
  IGHV145, VH
• Links
  HGNC:5553

  NCBI Gene ID: 28466

  UniProt: A0A0A0MS14

  
  
• Chr Location
  14q32.33; chr14:106506996-106507433 (-)  GRCh38.p7

---

• Human Ortholog
  IGHV1-69-2, immunoglobulin heavy variable 1-69-2
  
• Synonyms
  IGHV1F, IGHV1-F
• Links
  HGNC:5562

  NCBI Gene ID: 28458

  UniProt: A0A0G2JMI3

  
  
• Chr Location
  14q32.33; chr14:106737110-106737547 (-)  GRCh38.p7

---

• Alliance of Genome Resources
  Ighv1-71 stringent orthology
  3 human;1 mouse;3 zebrafish
  
• HCOP
  vertebrate homology predictions: IGHV1-24, IGHV1-45, IGHV1-69-2
• Gene Tree
  Ighv1-71
  

Expression

• Assay Results
  672

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000096577 (Evidence)
• NCBI Gene
  619886

Representative Sequences			Length	Strain/Species
genomic	619886	NCBI Gene Model | MGI Sequence Detail	302	C57BL/6J

References

• Summaries
  All 6
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Ighv1-71:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118122	Chr12:115706294-115706323 (-)	-183 bp