About   Help   FAQ
Sox5it Gene Detail
Summary
  • Symbol
    Sox5it
  • Name
    SRY (sex determining region Y)-box 5, intronic transcript
  • Synonyms
    Gm10396
Location &
Maps
more
  • Sequence Map
    Chr6:144670427-144672720 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 77.03 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    66 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642586
sense intronic lncRNA gene Chr6:144670427-144672720 (-)
129S1/SvImJ MGP_129S1SvImJ_G0037070
sense intronic lncRNA gene Chr6:149614566-149616859 (-)
A/J MGP_AJ_G0037058
sense intronic lncRNA gene Chr6:143708780-143711073 (-)
AKR/J MGP_AKRJ_G0037006
sense intronic lncRNA gene Chr6:147996475-147998801 (-)
BALB/cJ MGP_BALBcJ_G0037049
sense intronic lncRNA gene Chr6:143468230-143470523 (-)
C3H/HeJ MGP_C3HHeJ_G0036736
sense intronic lncRNA gene Chr6:148012237-148014563 (-)
C57BL/6NJ MGP_C57BL6NJ_G0037561
sense intronic lncRNA gene Chr6:153633879-153636172 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0034606
sense intronic lncRNA gene Chr6:142461708-142463985 (-)
CAST/EiJ MGP_CASTEiJ_G0035923
sense intronic lncRNA gene Chr6:147621313-147623640 (-)
CBA/J MGP_CBAJ_G0036711
sense intronic lncRNA gene Chr6:159501907-159504200 (-)
DBA/2J MGP_DBA2J_G0036886
sense intronic lncRNA gene Chr6:142509244-142511570 (-)
FVB/NJ MGP_FVBNJ_G0036836
sense intronic lncRNA gene Chr6:141250279-141252572 (-)
LP/J MGP_LPJ_G0036933
sense intronic lncRNA gene Chr6:149708951-149711244 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0036843
sense intronic lncRNA gene Chr6:163320886-163323179 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0037679
sense intronic lncRNA gene Chr6:147821325-147823651 (-)
PWK/PhJ MGP_PWKPhJ_G0035616
sense intronic lncRNA gene Chr6:141009010-141011431 (-)
SPRET/EiJ MGP_SPRETEiJ_G0035425
sense intronic lncRNA gene Chr6:145968081-145970428 (-)
WSB/EiJ MGP_WSBEiJ_G0036124
sense intronic lncRNA gene Chr6:148401311-148403604 (-)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000072677 Ensembl Gene Model | MGI Sequence Detail 2294 C57BL/6J ±  kb
transcript ENSMUST00000144026 Ensembl | MGI Sequence Detail 1207 Not Applicable  
polypeptide Q3V428 UniProt | EBI | MGI Sequence Detail 69 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 6
  • Earliest
    J:23000 MGD Nomenclature Committee, 2/14/1995;
  • Latest
    J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/22/2020
MGI 6.16
The Jackson Laboratory