L1td1
Gene Detail

Symbol Name ID

L1td1 LINE-1 type transposase domain containing 1 MGI:3578435

Synonyms

ECAT11

Feature Type

protein coding gene

Genetic Map

Chromosome 4

45.60 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr4:98726734-98738480 bp, + strand From VEGA annotation of GRCm38   11747 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:49588  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog

Gene Tree: L1td1

Human homologs

Human Homolog		L1TD1, LINE-1 type transposase domain containing 1
NCBI Gene ID		54596
neXtProt AC		NX_Q5T7N2
Human Synonyms		ECAT11, RP5-1155K23.3
Human Chr (Location)		1p31.3; chr1:62660474-62678000 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(111) : Targeted(1) Gene trapped(110)
 

Mice homozygous for a knock-out allele exhibit normal development and fertility.

 

Gene Ontology (GO) classifications

All GO classifications: (3 annotations)

Process	biological_process
Component	cellular_component
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (4)    Tissues (4)   
Theiler Stages: 21

Assay Type	Results
RNA in situ	4

cDNA source data(37)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(39) cDNA(37) Primer pair(1) Other(1)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000008672 (Evidence)
Ensembl Gene Model	ENSMUSG00000087166 (Evidence)
Entrez Gene	381591 (Evidence)
UniGene	34340
DFCI	TC1582566, TC1691456
DoTS	DT.101726004, DT.40169455, DT.87030931
NIA Mouse Gene Index	U004524
Consensus CDS Project	CCDS51235.1
International Mouse Knockout Project Status	L1td1

Sequences

Length	Strain/Species
genomic	OTTMUSG00000008672	VEGA Gene Model | MGI Sequence Detail	11747	C57BL/6J
transcript	OTTMUST00000096967	VEGA | MGI Sequence Detail	2547	Not Applicable
polypeptide	OTTMUSP00000054262	VEGA | MGI Sequence Detail	848	Not Applicable

All sequences(39) RefSeq(2) UniProt(4)

Polymorphisms

SNPs(109 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR004244	Transposase, L1
Protein Ontology	PR:000029596	LINE-1 type transposase domain-containing protein 1

References

(Earliest) J:83420 Mitsui K, et al., The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell. 2003 May 30;113(5):631-42
(Latest) J:190524 Shalom-Barak T, et al., Placental PPARgamma regulates spatiotemporally diverse genes and a unique metabolic network. Dev Biol. 2012 Dec 1;372(1):143-55
All references(34)

Other accession IDs

MGI:3034299, MGI:3034610