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L1td1
Gene Detail
Symbol

Name
ID
L1td1
LINE-1 type transposase domain containing 1
MGI:3578435
Synonyms
ECAT11
Feature Type
protein coding gene
Genetic Map
Chromosome 4
45.60 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr4:98726734-98738480 bp, + strand
From VEGA annotation of GRCm38

  11747 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:135709  Vertebrate Homology Class
1 mouse; 1 rat

HCOP human homology predictions: L1TD1
Gene Tree: L1td1

Human
homologs
L1TD1, LINE-1 type transposase domain containing 1
Orthology source: HGNC

IDs:
NCBI Gene ID: 54596
neXtProt AC: NX_Q5T7N2

Human Synonyms: ECAT11

Human Chr (Location): 1p31.3; chr1:62194802-62212328 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(112) : Gene trapped(110) Targeted(2)
Genomic Mutations involving L1td1 (1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a knock-out allele exhibit normal development and fertility.
 
Interactions
L1td1 interacts with 66 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (4)    Tissues (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 4
cDNA source data(37)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(39) cDNA(37) Primer pair(1) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000008672 (Evidence)
Ensembl Gene Model ENSMUSG00000087166 (Evidence)
Entrez Gene 381591 (Evidence)
UniGene 34340
DFCI TC1691456, TC1582566
DoTS DT.87030931, DT.40169455, DT.101726004
NIA Mouse Gene Index U004524
Consensus CDS Project CCDS51235.1
International Mouse Phenotyping Consortium Status L1td1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000008672 VEGA Gene Model | MGI Sequence Detail 11747 C57BL/6J ±  kb
transcript OTTMUST00000096967 VEGA | MGI Sequence Detail 2547 Not Applicable 
polypeptide OTTMUSP00000054262 VEGA | MGI Sequence Detail 848 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(2) UniProt(4)
Polymorphisms
SNPs within 2kb(153 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004244 Transposase, L1
Protein Ontology PR:000029596 LINE-1 type transposase domain-containing protein 1
References
(Earliest) J:83420 Mitsui K, et al., The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell. 2003 May 30;113(5):631-42
(Latest) J:214809 Moniot B, et al., Prostaglandin D2 acts through the Dp2 receptor to influence male germ cell differentiation in the foetal mouse testis. Development. 2014 Sep;141(18):3561-71
All references(35)
Other
accession IDs
MGI:3034299, MGI:3034610

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory