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L1td1
Gene Detail
 Symbol
Name
ID
L1td1
LINE-1 type transposase domain containing 1
MGI:3578435
Synonyms ECAT11
Feature Type protein coding gene
Genetic Map
Chromosome 4
45.60 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr4:98726734-98738480 bp, + strand
From VEGA annotation of GRCm38

  11747 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:135709  Vertebrate Homology Class
1 mouse; 1 rat

Gene Tree: L1td1

Mutations,
alleles, and
phenotypes
All mutations/alleles(111) : Gene trapped(110) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a knock-out allele exhibit normal development and fertility.
 
Interactions
L1td1 interacts with 66 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (4)    Tissues (4)   
Theiler Stages: 21
Assay TypeResults
RNA in situ 4
cDNA source data(37)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(39) cDNA(37) Primer pair(1) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000008672 (Evidence)
Ensembl Gene ModelENSMUSG00000087166 (Evidence)
Entrez Gene381591 (Evidence)
UniGene34340
DFCITC1582566, TC1691456
DoTSDT.101726004, DT.40169455, DT.87030931
NIA Mouse Gene IndexU004524
Consensus CDS ProjectCCDS51235.1
International Mouse Knockout Project StatusL1td1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000008672 VEGA Gene Model | MGI Sequence Detail 11747 C57BL/6J ±  kb
transcript OTTMUST00000096967 VEGA | MGI Sequence Detail 2547 Not Applicable 
polypeptide OTTMUSP00000054262 VEGA | MGI Sequence Detail 848 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(2) UniProt(4)
Polymorphisms SNPs within 2kb(153 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004244 Transposase, L1
Protein Ontology PR:000029596 LINE-1 type transposase domain-containing protein 1
References (Earliest) J:83420 Mitsui K, et al., The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell. 2003 May 30;113(5):631-42
(Latest) J:196366 Krentz AD, et al., Interaction between DMRT1 function and genetic background modulates signaling and pluripotency to control tumor susceptibility in the fetal germ line. Dev Biol. 2013 May 1;377(1):67-78
All references(35)
Other
accession IDs
MGI:3034299, MGI:3034610

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory