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Zkscan16 Gene Detail
Summary
  • Symbol
    Zkscan16
  • Name
    zinc finger with KRAB and SCAN domains 16
  • Synonyms
    Zfp483
  • Feature Type
    protein coding gene
  • IDs
    MGI:3510405
    NCBI Gene: 100041581
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:58943628-58958355 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 32.36 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    199 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3510405
protein coding gene Chr4:58943568-58962624 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028328
protein coding gene Chr4:57815316-57834766 (+)
A/J MGP_AJ_G0028289
protein coding gene Chr4:55592816-55607450 (+)
AKR/J MGP_AKRJ_G0028238
protein coding gene Chr4:57158997-57174801 (+)
BALB/cJ MGP_BALBcJ_G0028308
protein coding gene Chr4:55770717-55785552 (+)
C3H/HeJ MGP_C3HHeJ_G0028029
protein coding gene Chr4:57620233-57635106 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028749
protein coding gene Chr4:59845241-59861115 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026055
protein coding gene Chr4:52337916-52352487 (+)
CAST/EiJ MGP_CASTEiJ_G0027467
protein coding gene Chr4:57390622-57406927 (+)
CBA/J MGP_CBAJ_G0027994
protein coding gene Chr4:61882380-61897878 (+)
DBA/2J MGP_DBA2J_G0028144
protein coding gene Chr4:55503460-55518374 (+)
FVB/NJ MGP_FVBNJ_G0028111
protein coding gene Chr4:54711663-54726413 (+)
LP/J MGP_LPJ_G0028243
protein coding gene Chr4:57905664-57925774 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028135
protein coding gene Chr4:65008329-65023877 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028785
protein coding gene Chr4:57340230-57355446 (+)
PWK/PhJ MGP_PWKPhJ_G0027192
protein coding gene Chr4:55518618-55537781 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027020
protein coding gene Chr4:56671184-56685663 (+)
WSB/EiJ MGP_WSBEiJ_G0027545
protein coding gene Chr4:57322911-57337619 (+)



Homology
more
  • Human Ortholog
    ZNF483, zinc finger protein 483
  • Vertebrate Orthologs
    6
  • Human Ortholog
    ZNF483, zinc finger protein 483
    Orthology source: HGNC, HomoloGene
  • Synonyms
    ZKSCAN16, ZSCAN48
  • Links
    NCBI Gene ID: 158399
    neXtProt AC: NX_Q8TF39
    UniProt: Q8TF39

  • Chr Location
    9q31.3; chr9:111525159-111577844 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038630 Ensembl Gene Model | MGI Sequence Detail 14728 C57BL/6J ±  kb
transcript ENSMUST00000107554 Ensembl | MGI Sequence Detail 2794 Not Applicable  
polypeptide ENSMUSP00000103178 Ensembl | MGI Sequence Detail 728 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 5
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 19
    Developmental Gene Expression 3
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/11/2018
MGI 6.13
The Jackson Laboratory