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Atg9b
Gene Detail
 Symbol
Name
ID
Atg9b
autophagy related 9B
MGI:2685420
Synonyms Apg9l2, eONE, LOC213948, Nos3as
Feature Type protein coding gene
Genetic Map
Chromosome 5
11.49 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:24384181-24392143 bp, - strand
From VEGA annotation of GRCm38

  7963 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:72638  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: Atg9b

Human
homologs
Human Homolog ATG9B, autophagy related 9B
NCBI Gene ID 285973
neXtProt AC  NX_Q674R7
Human Synonyms  APG9L2, NOS3AS, SONE
Human Chr (Location)  7q36.1; chr7:151012209-151024499 (-)  GRCh38
Alleles
and
phenotypes
All alleles(6) : Targeted(2) Gene trapped(4)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process autophagic vacuole assembly, autophagy
Component autophagic vacuole, cytoplasm, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(3)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(4) cDNA(3) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000024105 (Evidence)
Ensembl Gene ModelENSMUSG00000038295 (Evidence)
Entrez Gene213948 (Evidence)
NIA Mouse Gene IndexU025992
Consensus CDS ProjectCCDS39027.1
International Mouse Knockout Project StatusAtg9b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024105 VEGA Gene Model | MGI Sequence Detail 7963 C57BL/6J ±  kb
transcript OTTMUST00000058962 VEGA | MGI Sequence Detail 3902 Not Applicable 
polypeptide OTTMUSP00000028643 VEGA | MGI Sequence Detail 922 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(6) UniProt(1)
Polymorphisms SNPs within 2kb(72 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007241 Autophagy-related protein 9
Protein Ontology PR:000004421 autophagy-related protein 9B
References (Earliest) J:96017 Robb GB, et al., Post-transcriptional regulation of endothelial nitric-oxide synthase by an overlapping antisense mRNA transcript. J Biol Chem. 2004 Sep 3;279(36):37982-96
(Latest) J:186989 Nicola AM, et al., Macrophage Autophagy in Immunity to Cryptococcus neoformans and Candida albicans. Infect Immun. 2012 Sep;80(9):3065-76
All references(27)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory