About   Help   FAQ
Atg9b
Gene Detail
Symbol

Name
ID
Atg9b
autophagy related 9B
MGI:2685420
Synonyms
Apg9l2, eONE, LOC213948, Nos3as
Feature Type
protein coding gene
Genetic Map
Chromosome 5
11.49 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:24384181-24392143 bp, - strand
From VEGA annotation of GRCm38

  7963 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:72638  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

HCOP human homology predictions: ATG9B
Gene Tree: Atg9b

Human
homologs
ATG9B, autophagy related 9B
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 285973
neXtProt AC: NX_Q674R7

Human Synonyms: APG9L2, NOS3AS, SONE

Human Chr (Location): 7q36.1; chr7:151012209-151024499 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(4) Targeted(3)
Incidental mutations (data from APF , CvDC )
Interactions
Atg9b interacts with 131 markers (Mir1a-1, Mir1a-2, Mir9-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process autophagosome assembly, autophagy, ...
Component autophagosome, cytoplasm, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(3)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase atg9b ; ZFIN atg9b    NEW 
Molecular
reagents
All nucleic(4) cDNA(3) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000024105 (Evidence)
Ensembl Gene Model ENSMUSG00000038295 (Evidence)
Entrez Gene 213948 (Evidence)
NIA Mouse Gene Index U025992
Consensus CDS Project CCDS39027.1
International Mouse Phenotyping Consortium Status Atg9b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024105 VEGA Gene Model | MGI Sequence Detail 7963 C57BL/6J ±  kb
transcript OTTMUST00000058962 VEGA | MGI Sequence Detail 3902 Not Applicable 
polypeptide OTTMUSP00000028643 VEGA | MGI Sequence Detail 922 Not Applicable 

For the selected sequences
All sequences(25) RefSeq(4) UniProt(1)
Polymorphisms
SNPs within 2kb(72 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007241 Autophagy-related protein 9
Protein Ontology PR:000004421 autophagy-related protein 9B
References
(Earliest) J:96017 Robb GB, et al., Post-transcriptional regulation of endothelial nitric-oxide synthase by an overlapping antisense mRNA transcript. J Biol Chem. 2004 Sep 3;279(36):37982-96
(Latest) J:186989 Nicola AM, et al., Macrophage Autophagy in Immunity to Cryptococcus neoformans and Candida albicans. Infect Immun. 2012 Sep;80(9):3065-76
All references(29)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/25/2015
MGI 6.0
The Jackson Laboratory