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Ccdc9b Gene Detail
Summary
  • Symbol
    Ccdc9b
  • Name
    coiled-coil domain containing 9B
  • Synonyms
    A430105I19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685199
    NCBI Gene: 214239
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:118754158-118762661 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 59.45 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    93 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685199
protein coding gene Chr2:118754145-118762953 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026321
protein coding gene Chr2:121458544-121467041 (-)
A/J MGP_AJ_G0026282
protein coding gene Chr2:116528445-116536940 (-)
AKR/J MGP_AKRJ_G0026261
protein coding gene Chr2:119794179-119802675 (-)
BALB/cJ MGP_BALBcJ_G0026295
protein coding gene Chr2:116789390-116797885 (-)
C3H/HeJ MGP_C3HHeJ_G0026041
protein coding gene Chr2:120256499-120264996 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026742
protein coding gene Chr2:125461114-125469616 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024122
protein coding gene Chr2:111571095-111579636 (-)
CAST/EiJ MGP_CASTEiJ_G0025503
protein coding gene Chr2:120564179-120572688 (-)
CBA/J MGP_CBAJ_G0026017
protein coding gene Chr2:129891425-129899922 (-)
DBA/2J MGP_DBA2J_G0026156
protein coding gene Chr2:115953060-115961555 (-)
FVB/NJ MGP_FVBNJ_G0026118
protein coding gene Chr2:114774338-114782834 (-)
LP/J MGP_LPJ_G0026257
protein coding gene Chr2:121786159-121794656 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026137
protein coding gene Chr2:134257060-134265557 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026797
protein coding gene Chr2:119919044-119927541 (-)
PWK/PhJ MGP_PWKPhJ_G0025239
protein coding gene Chr2:115500658-115509156 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025038
protein coding gene Chr2:119085620-119094115 (-)
WSB/EiJ MGP_WSBEiJ_G0025572
protein coding gene Chr2:120737223-120745720 (-)



Homology
more
  • Human Ortholog
    CCDC9B, coiled-coil domain containing 9B
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CCDC9B, coiled-coil domain containing 9B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C15orf52
  • Links
    NCBI Gene ID: 388115
    neXtProt AC: NX_Q6ZUT6
    UniProt: Q6ZUT6

  • Chr Location
    15q15.1; chr15:40331452-40340967 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Radiation induced
    1
  • Targeted
    5
  • Genomic Mutations
    2 involving Ccdc9b
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000045838 Ensembl Gene Model | MGI Sequence Detail 8504 C57BL/6J ±  kb
transcript ENSMUST00000059997 Ensembl | MGI Sequence Detail 4703 Not Applicable  
polypeptide ENSMUSP00000051853 Ensembl | MGI Sequence Detail 545 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR029336 Protein of unknown function DUF4594
Molecular
Reagents
less
  • All nucleic 13
    cDNA 12
    Other 1

    Microarray probesets 1
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Phenotypes 10
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/05/2019
MGI 6.14
The Jackson Laboratory