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Trim40 Gene Detail
Summary
  • Symbol
    Trim40
  • Name
    tripartite motif-containing 40
  • Synonyms
    LOC195359, LOC240093, LOC333872
  • Feature Type
    protein coding gene
  • IDs
    MGI:2684881
    NCBI Gene: 195359
Location & Maps
more
  • Sequence Map
    Chr17:36881598-36890123 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      8526 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 19.16 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    TRIM40, tripartite motif containing 40
  • Vertebrate Orthologs
    6
  • Human Ortholog
    TRIM40, tripartite motif containing 40
    Orthology source: HomoloGene
  • Synonyms
    RNF35
  • Links
    NCBI Gene ID: 135644
    neXtProt AC: NX_Q6P9F5

  • Chr Location
    6p22.1; chr6:30134510-30148773 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype reference
  • All Mutations and Alleles
    1
  • Targeted
    1
  • Genomic Mutations
    1 involving Trim40
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037381 VEGA Gene Model | MGI Sequence Detail 8526 C57BL/6J ±  kb
transcript OTTMUST00000096448 VEGA | MGI Sequence Detail 2117 Not Applicable  
polypeptide OTTMUSP00000053889 VEGA | MGI Sequence Detail 246 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    3 from dbSNP Build 142
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000029823 tripartite motif-containing protein 40
  • InterPro Domains
    IPR000315 B-box-type zinc finger
    IPR018957 Zinc finger, C3HC4 RING-type
    IPR013083 Zinc finger, RING/FYVE/PHD-type
    IPR001841 Zinc finger, RING-type
    IPR017907 Zinc finger, RING-type, conserved site
Molecular
Reagents
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  • All nucleic 5
    cDNA 5

    Microarray probesets 2
Other
Accession IDs
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MGI:2685165, MGI:2685711
References
more
  • Summaries
    All 21
    Gene Ontology 4
    Phenotypes 1
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory