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Slc9a9
Gene Detail
Symbol

Name
ID
Slc9a9
solute carrier family 9 (sodium/hydrogen exchanger), member 9
MGI:2679732
Synonyms
5730527A11Rik, Nhe9
Feature Type
protein coding gene
Genetic Map
Chromosome 9
49.22 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr9:94669909-95230445 bp, + strand
From VEGA annotation of GRCm38

  560537 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:69753  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Slc9a9

Human
homologs
Human Homolog SLC9A9, solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9
NCBI Gene ID 285195
neXtProt AC  NX_Q8IVB4
Human Synonyms  AUTS16, NHE9
Human Chr (Location)  3q24; chr3:143265222-143848531 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human SLC9A9
Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(2) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc9a9 interacts with 199 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process cation transport, ion transport, ...
Component endosome, integral component of membrane, ...
Function antiporter activity, sodium:proton antiporter activity, ...
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (161)    Tissues (129)    Images (24)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 161
cDNA source data(28)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(30) cDNA(28) Primer pair(1) Other(1)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000032832 (Evidence)
Ensembl Gene ModelENSMUSG00000031129 (Evidence)
Entrez Gene331004 (Evidence)
UniGene326125
DFCITC1716494, TC1730580, TC1579688
DoTSDT.94172130, DT.91332432, DT.55130694, DT.97393909
NIA Mouse Gene IndexU010859
Consensus CDS ProjectCCDS40726.1
International Mouse Knockout Project StatusSlc9a9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000032832 VEGA Gene Model | MGI Sequence Detail 560537 C57BL/6J ±  kb
transcript OTTMUST00000081766 VEGA | MGI Sequence Detail 3468 Not Applicable 
polypeptide OTTMUSP00000043785 VEGA | MGI Sequence Detail 644 Not Applicable 

For the selected sequences
All sequences(38) RefSeq(2) UniProt(7)
Polymorphisms
SNPs within 2kb(6828 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006153 Cation/H+ exchanger
InterPro IPR018422 Cation/H+ exchanger, CPA1 family
InterPro IPR004709 Na+/H+ exchanger
InterPro IPR002090 Na+/H+ exchanger, isoform 6 (NHE6)
InterPro IPR018416 Na+/H+ exchanger, isoforms 3/9
Protein Ontology PR:000015221 sodium/hydrogen exchanger 9
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:201826 Ouyang Q, et al., Christianson Syndrome Protein NHE6 Modulates TrkB Endosomal Signaling Required for Neuronal Circuit Development. Neuron. 2013 Oct 2;80(1):97-112
All references(37)
Other
accession IDs
MGI:1917898, MGI:2143161

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory