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U2af1l4
Gene Detail
 Symbol
Name
ID
U2af1l4
U2 small nuclear RNA auxiliary factor 1-like 4
MGI:2678374
Synonyms auxiliary factor 26, U2af26
Feature Type protein coding gene
Genetic Map
Chromosome 7
18.61 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr7:30563301-30567960 bp, + strand
From VEGA annotation of GRCm38

  4660 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:57743  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: U2af1l4

Human
homologs
Human Homolog U2AF1L4, U2 small nuclear RNA auxiliary factor 1-like 4
NCBI Gene ID 199746
neXtProt AC  NX_Q8WU68
Human Synonyms  U2AF1L3, U2AF1L3V1, U2AF1RS3, U2AF1-RS3, U2af26
Human Chr (Location)  19q13.12; chr19:35742527-35745442 (-)  GRCh38
Alleles
and
phenotypes
All alleles(8) : Targeted(2) Gene trapped(6)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process mRNA processing, RNA splicing
Component nucleus, spliceosomal complex
Function metal ion binding, nucleic acid binding, ...
External Resources: FuncBase
Expression
cDNA source data(10)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(12) cDNA(12)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000036722 (Evidence)
Ensembl Gene ModelENSMUSG00000078765 (Evidence)
Entrez Gene233073 (Evidence)
Consensus CDS ProjectCCDS21100.1
International Mouse Knockout Project StatusU2af1l4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000036722 VEGA Gene Model | MGI Sequence Detail 4660 C57BL/6J ±  kb
transcript OTTMUST00000094114 VEGA | MGI Sequence Detail 884 Not Applicable 
polypeptide OTTMUSP00000052288 VEGA | MGI Sequence Detail 220 Not Applicable 

For the selected sequences
All sequences(151) RefSeq(2) UniProt(15)
Polymorphisms SNPs within 2kb(66 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR000504 RNA recognition motif domain
InterPro IPR009145 U2 auxiliary factor small subunit
InterPro IPR000571 Zinc finger, CCCH-type
Protein Ontology PR:000016945 splicing factor U2AF 26 kDa subunit
References (Earliest) J:83847 Shepard J, et al., Characterization of U2AF(6), a splicing factor related to U2AF(35). Mol Cell Biol. 2002 Jan;22(1):221-30
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(30)
Other
accession IDs
MGI:2141802, MGI:2141967, MGI:2142260

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory