Galnt9
Gene Detail

Symbol Name ID

Galnt9 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 MGI:2677965

Synonyms

GalNAc-T9

Feature Type

protein coding gene

Genetic Map

Chromosome 5

53.66 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr5:110544345-110621382 bp, + strand From NCBI annotation of GRCm38   77038 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:72793  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Galnt9

Human homologs

Human Homolog		GALNT9, UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)
NCBI Gene ID		50614
neXtProt AC		NX_Q9HCQ5
Human Synonyms		GALNACT9, GALNAC-T9
Human Chr (Location)		12q24.33

Alleles and phenotypes

All alleles(3) : Gene trapped(3)

Gene Ontology (GO) classifications

All GO classifications: (6 annotations)

Process	biological_process
Component	Golgi apparatus, integral to membrane, ...
Function	transferase activity, transferase activity, transferring glycosyl groups

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (231)    Tissues (112)    Images (35)
Theiler Stages: 22, 23

Assay Type	Results
RNA in situ	231

cDNA source data(8)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress

Molecular reagents

All nucleic(8) cDNA(8)
Microarray probesets(3)

Other database links

Ensembl Gene Model	ENSMUSG00000033316 (Evidence)
Entrez Gene	231605 (Evidence)
UniGene	275748
DFCI	TC1584352, TC1626575, TC1688203
DoTS	DT.101365312, DT.110648832, DT.55171002, DT.91287313
NIA Mouse Gene Index	U005977
Consensus CDS Project	CCDS51610.1, CCDS51611.1
International Mouse Knockout Project Status	Galnt9

Sequences

Length	Strain/Species
genomic	231605	NCBI Gene Model | MGI Sequence Detail	77038	C57BL/6J
transcript	NM_198306	RefSeq | MGI Sequence Detail	2900	C57BL/6
polypeptide	NP_938048	RefSeq | MGI Sequence Detail	604	C57BL/6

All sequences(29) RefSeq(4) UniProt(3)

Polymorphisms

SNPs(87 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001173	Glycosyl transferase, family 2
InterPro	IPR000772	Ricin B lectin domain
Protein Ontology	PR:000007830	polypeptide N-acetylgalactosaminyltransferase 9

References

(Earliest) J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(27)