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Ybey
Gene Detail
 Symbol
Name
ID
Ybey
ybeY metallopeptidase
MGI:2656825
Synonyms A130042E20Rik, ORF57, ORF66
Feature Type protein coding gene
Genetic Map
Chromosome 10
38.85 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr10:76459569-76469114 bp, - strand
From Ensembl annotation of GRCm38

  9546 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:18193  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 2 zebrafish

Gene Tree: Ybey

Human
homologs
Human Homolog YBEY, ybeY metallopeptidase (putative)
NCBI Gene ID 54059
neXtProt AC  NX_P58557
Human Synonyms  C21orf57
Human Chr (Location)  21q22.3; chr21:46286336-46313102 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(61) : Gene trapped(55) Targeted(6)
Genomic Mutations involving Ybey (4)
Alleles Annotated to Human Diseases(1)   
Interactions
Ybey interacts with 318 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process rRNA processing
Component mitochondrion, nucleus
Function metal ion binding, metalloendopeptidase activity
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (92)    Tissues (91)    Images (4)
Theiler Stages: 13, 15, 17, 20, 22, 26, 28
Assay TypeResults
RNA in situ 76
RT-PCR 16
cDNA source data(8)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(11) Genomic(1) cDNA(9) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000033126 (Evidence)
Entrez Gene216119 (Evidence)
DFCITC1647900, TC1697628
NIA Mouse Gene IndexU031943
Consensus CDS ProjectCCDS23946.1
International Mouse Knockout Project StatusYbey
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000033126 Ensembl Gene Model | MGI Sequence Detail 9546 C57BL/6J ±  kb
transcript ENSMUST00000049185 Ensembl | MGI Sequence Detail 4520 Not Applicable 
polypeptide ENSMUSP00000045647 Ensembl | MGI Sequence Detail 164 Not Applicable 

For the selected sequences
All sequences(17) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(45 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002036 Endoribonuclease YbeY
InterPro IPR020549 Endoribonuclease YbeY, conserved site
InterPro IPR023091 Metalloprotease catalytic domain, predicted
Protein Ontology PR:000031420 rRNA maturation factor homolog
References (Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(36)
Other
accession IDs
MGI:2157496, MGI:2652699

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory