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R3hdm1
Gene Detail
 Symbol
Name
ID
R3hdm1
R3H domain containing 1
MGI:2448514
Feature Type protein coding gene
Genetic Map
Chromosome 1
55.80 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:128103306-128237735 bp, + strand
From NCBI annotation of GRCm38

  134430 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9108  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: R3hdm1

Human
homologs
Human Homolog R3HDM1, R3H domain containing 1
NCBI Gene ID 23518
neXtProt AC  NX_Q15032
Human Synonyms  R3HDM
Human Chr (Location)  2q21.3; chr2:135531455-135725270 (+)  GRCh38
Alleles
and
phenotypes
All alleles(43) : Targeted(1) Gene trapped(42)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function poly(A) RNA binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (5)    Tissues (3)    Images (1)
Theiler Stages: 22, 26, 28
Assay TypeResults
RT-PCR 5
cDNA source data(129)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(131) cDNA(130) Primer pair(1)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000056211 (Evidence)
Entrez Gene226412 (Evidence)
UniGene221041
DFCITC1579431, TC1582471, TC1602061, TC1604084, TC1604651, TC1617128
DoTSDT.101221230, DT.101388374, DT.110942223, DT.529117, DT.55247835, DT.91357457, DT.91573324, DT.94164434
NIA Mouse Gene IndexU000758
Consensus CDS ProjectCCDS15250.1
International Mouse Knockout Project StatusR3hdm1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 226412 NCBI Gene Model | MGI Sequence Detail 134430 C57BL/6J ±  kb
transcript NM_181750 RefSeq | MGI Sequence Detail 4812 FVB/N 
polypeptide NP_861415 RefSeq | MGI Sequence Detail 1135 FVB/N 

For the selected sequences
All sequences(68) RefSeq(22) UniProt(6)
Polymorphisms SNPs within 2kb(484 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001374 Single-stranded nucleic acid binding R3H
InterPro IPR024771 SUZ domain
Protein Ontology PR:000032163 R3H domain-containing protein 1
References (Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory