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R3hdm1
Gene Detail
Symbol

Name
ID
R3hdm1
R3H domain containing 1
MGI:2448514
Feature Type
protein coding gene
Genetic Map
Chromosome 1
55.80 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:128103301-128237736 bp, + strand
From VEGA annotation of GRCm38

  134436 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9108  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: R3hdm1

Human
homologs
Human Homolog R3HDM1, R3H domain containing 1
NCBI Gene ID 23518
neXtProt AC  NX_Q15032
Human Synonyms  R3HDM
Human Chr (Location)  2q21.3; chr2:135531455-135725270 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(43) : Gene trapped(42) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
R3hdm1 interacts with 276 markers (Mir1b, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function poly(A) RNA binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (5)    Tissues (4)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RT-PCR 5
cDNA source data(129)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(131) cDNA(130) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000049353 (Evidence)
Ensembl Gene ModelENSMUSG00000056211 (Evidence)
Entrez Gene226412 (Evidence)
UniGene221041
DFCITC1579431, TC1582471, TC1602061, TC1604084, TC1604651, TC1617128
DoTSDT.101221230, DT.101388374, DT.110942223, DT.529117, DT.55247835, DT.91357457, DT.91573324, DT.94164434
NIA Mouse Gene IndexU000758
Consensus CDS ProjectCCDS15250.1
International Mouse Knockout Project StatusR3hdm1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000049353 VEGA Gene Model | MGI Sequence Detail 134436 C57BL/6J ±  kb
transcript OTTMUST00000125806 VEGA | MGI Sequence Detail 4795 Not Applicable 
polypeptide OTTMUSP00000068101 VEGA | MGI Sequence Detail 1135 Not Applicable 

For the selected sequences
All sequences(93) RefSeq(22) UniProt(6)
Polymorphisms
SNPs within 2kb(484 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001374 Single-stranded nucleic acid binding R3H
InterPro IPR024771 SUZ domain
Protein Ontology PR:000032163 R3H domain-containing protein 1
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory