BC030500 Gene Detail

Summary

• Symbol
  BC030500
• Name
  cDNA sequence BC030500
• Synonyms
  MGC:40983

• Feature Type
  protein coding gene
• IDs
  MGI:2447770
  NCBI Gene: 234290
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:59364789-59367332 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 30.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2447770	protein coding gene	Chr8:59364789-59367332 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0033627	protein coding gene	Chr8:58737885-58740427 (+)
A/J	MGP_AJ_G0033609	protein coding gene	Chr8:56236929-56239470 (+)
AKR/J	MGP_AKRJ_G0033534	protein coding gene	Chr8:57868869-57871397 (+)
BALB/cJ	MGP_BALBcJ_G0033605	protein coding gene	Chr8:56512592-56515138 (+)
C3H/HeJ	MGP_C3HHeJ_G0033315	protein coding gene	Chr8:58549446-58551992 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0034122	protein coding gene	Chr8:60942116-60944658 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031070	protein coding gene	Chr8:51683538-51686073 (+)
CAST/EiJ	MGP_CASTEiJ_G0032640	protein coding gene	Chr8:57960843-57963390 (+)
CBA/J	MGP_CBAJ_G0033293	protein coding gene	Chr8:63203648-63206189 (+)
DBA/2J	MGP_DBA2J_G0033447	protein coding gene	Chr8:55995120-55998106 (+)
FVB/NJ	MGP_FVBNJ_G0033388	protein coding gene	Chr8:55348243-55350789 (+)
LP/J	MGP_LPJ_G0033535	protein coding gene	Chr8:58699608-58702154 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0033432	protein coding gene	Chr8:64999314-65001855 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034140	protein coding gene	Chr8:58139338-58141880 (+)
PWK/PhJ	MGP_PWKPhJ_G0032349	protein coding gene	Chr8:55357881-55360421 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0032185	protein coding gene	Chr8:57062413-57064950 (+)
WSB/EiJ	MGP_WSBEiJ_G0032757	protein coding gene	Chr8:58434784-58437330 (+)

Homology

• Gene Tree
  BC030500
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  1 involving BC030500
• Incidental Mutations
  APF
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  4
• UniProt
  2
• CCDS
  CCDS40345.1

• Ensembl
  ENSMUSG00000049946 (Evidence)
• NCBI Gene
  234290

Representative Sequences			Length	Strain/Species
genomic	234290	NCBI Gene Model | MGI Sequence Detail	2544	C57BL/6J
transcript	NM_173411	RefSeq | MGI Sequence Detail	1605	C57BL/6
polypeptide	NP_775587	RefSeq | MGI Sequence Detail	123	C57BL/6

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 3

References

• Summaries
  All 18

  Phenotypes 3
• Earliest
  J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for BC030500:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77441	Chr8:59366730-59366738 (+)	1,945 bp