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Lrif1 Gene Detail
Summary
  • Symbol
    Lrif1
  • Name
    ligand dependent nuclear receptor interacting factor 1
  • Synonyms
    2010012G17Rik, 4933421E11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445214
    NCBI Gene: 321000
  • Gene Overview
    MyGene.info: LRIF1
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr3:106684987-106736577 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      51591 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 46.52 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    LRIF1, ligand dependent nuclear receptor interacting factor 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    LRIF1, ligand dependent nuclear receptor interacting factor 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C1orf103, RIF1
  • Links
    NCBI Gene ID: 55791
    neXtProt AC: NX_Q5T3J3
    UniProt: Q5T3J3

  • Chr Location
    1p13.3; chr1:110877252-110964203 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    10
  • Chemically induced (other)
    1
  • Gene trapped
    8
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Lrif1
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000032748 VEGA Gene Model | MGI Sequence Detail 51591 C57BL/6J ±  kb
transcript OTTMUST00000081499 VEGA | MGI Sequence Detail 3103 Not Applicable  
polypeptide OTTMUSP00000043617 VEGA | MGI Sequence Detail 755 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    117 from dbSNP Build 142
Protein
Information
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  • UniProt
    8 Sequences
  • Protein Ontology
    PR:000030510 ligand-dependent nuclear receptor-interacting factor 1
  • InterPro Domains
    IPR026191 Ligand-dependent nuclear receptor-interacting factor 1
Molecular
Reagents
less
  • All nucleic 88
    cDNA 88

    Microarray probesets 5
Other
Accession IDs
less
MGI:1919314, MGI:2139718
References
more
  • Summaries
    All 32
    Diseases 1
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:235840 Brideau NJ, et al., Independent Mechanisms Target SMCHD1 to Trimethylated Histone H3 Lysine 9-Modified Chromatin and the Inactive X Chromosome. Mol Cell Biol. 2015 Dec;35(23):4053-68

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/11/2018
MGI 6.12
The Jackson Laboratory