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Lrif1 Gene Detail
Summary
  • Symbol
    Lrif1
  • Name
    ligand dependent nuclear receptor interacting factor 1
  • Synonyms
    2010012G17Rik, 4933421E11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445214
    NCBI Gene: 321000
  • Gene Overview
    MyGene.info: LRIF1
  • Alliance
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:106684987-106736577 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 46.52 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    117 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2445214
protein coding gene Chr3:106684941-106736577 (.)
129S1/SvImJ MGP_129S1SvImJ_G0027736
protein coding gene Chr3:108141185-108195342 (+)
A/J MGP_AJ_G0027696
protein coding gene Chr3:104724136-104775506 (+)
AKR/J MGP_AKRJ_G0027661
protein coding gene Chr3:107276184-107330014 (+)
BALB/cJ MGP_BALBcJ_G0027708
protein coding gene Chr3:104421560-104474736 (+)
C3H/HeJ MGP_C3HHeJ_G0027438
protein coding gene Chr3:107612989-107661861 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028152
protein coding gene Chr3:112184967-112239265 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025490
protein coding gene Chr3:100904307-100950445 (+)
CAST/EiJ MGP_CASTEiJ_G0026894
protein coding gene Chr3:106985075-107034573 (+)
CBA/J MGP_CBAJ_G0027413
protein coding gene Chr3:115979398-116030100 (+)
DBA/2J MGP_DBA2J_G0027555
protein coding gene Chr3:103922304-103972456 (+)
FVB/NJ MGP_FVBNJ_G0027523
protein coding gene Chr3:101818917-101867022 (+)
LP/J MGP_LPJ_G0027662
protein coding gene Chr3:109532243-109603970 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027553
protein coding gene Chr3:122074638-122140899 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028207
protein coding gene Chr3:106837568-106889082 (+)
PWK/PhJ MGP_PWKPhJ_G0026620
protein coding gene Chr3:103656313-103702537 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026440
protein coding gene Chr3:104989469-105040634 (+)
WSB/EiJ MGP_WSBEiJ_G0026974
protein coding gene Chr3:107398418-107448107 (+)



Homology
more
  • Human Ortholog
    LRIF1, ligand dependent nuclear receptor interacting factor 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    LRIF1, ligand dependent nuclear receptor interacting factor 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C1orf103, HBiX1, RIF1
  • Links
    NCBI Gene ID: 55791
    neXtProt AC: NX_Q5T3J3
    UniProt: Q5T3J3

  • Chr Location
    1p13.3; chr1:110877252-110964203 (-)  GRCh38.p7

Human Diseases
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  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    10
  • Chemically induced (other)
    1
  • Gene trapped
    8
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Lrif1
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000056260 Ensembl Gene Model | MGI Sequence Detail 51591 C57BL/6J ±  kb
transcript ENSMUST00000098750 Ensembl | MGI Sequence Detail 3103 Not Applicable  
polypeptide ENSMUSP00000096346 Ensembl | MGI Sequence Detail 755 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    8 Sequences
  • Protein Ontology
    PR:000030510 ligand-dependent nuclear receptor-interacting factor 1
  • InterPro Domains
    IPR026191 Ligand-dependent nuclear receptor-interacting factor 1
Molecular
Reagents
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  • All nucleic 88
    cDNA 88

    Microarray probesets 5
Other
Accession IDs
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MGI:1919314, MGI:2139718
References
more
  • Summaries
    All 32
    Diseases 1
    Gene Ontology 6
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:235840 Brideau NJ, et al., Independent Mechanisms Target SMCHD1 to Trimethylated Histone H3 Lysine 9-Modified Chromatin and the Inactive X Chromosome. Mol Cell Biol. 2015 Dec;35(23):4053-68

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory