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Tyw3 Gene Detail
Summary
  • Symbol
    Tyw3
  • Name
    tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
  • Synonyms
    5230400J09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445040
    NCBI Gene: 209584
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:154576520-154597112 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 79.24 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    143 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2445040
protein coding gene Chr3:154576431-154597112 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028003
protein coding gene Chr3:158599366-158613625 (-)
A/J MGP_AJ_G0027962
protein coding gene Chr3:152809111-152823494 (-)
AKR/J MGP_AKRJ_G0027928
protein coding gene Chr3:156893151-156911789 (-)
BALB/cJ MGP_BALBcJ_G0027974
protein coding gene Chr3:152614623-152629266 (-)
C3H/HeJ MGP_C3HHeJ_G0027704
protein coding gene Chr3:157266078-157285433 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028417
protein coding gene Chr3:163775421-163791688 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025755
protein coding gene Chr3:147565418-147584776 (-)
CAST/EiJ MGP_CASTEiJ_G0027157
protein coding gene Chr3:157395434-157412391 (-)
CBA/J MGP_CBAJ_G0027679
protein coding gene Chr3:169663962-169682507 (-)
DBA/2J MGP_DBA2J_G0027819
protein coding gene Chr3:151879024-151895032 (-)
FVB/NJ MGP_FVBNJ_G0027786
protein coding gene Chr3:149254577-149270095 (-)
LP/J MGP_LPJ_G0027930
protein coding gene Chr3:159918645-159934501 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027819
protein coding gene Chr3:178101369-178120272 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028476
protein coding gene Chr3:156539563-156557160 (-)
PWK/PhJ MGP_PWKPhJ_G0026880
protein coding gene Chr3:151800526-151826325 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026708
protein coding gene Chr3:154700051-154719280 (-)
WSB/EiJ MGP_WSBEiJ_G0027237
protein coding gene Chr3:157525460-157545349 (-)



Homology
more
  • Human Ortholog
    TYW3, tRNA-yW synthesizing protein 3 homolog
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TYW3, tRNA-yW synthesizing protein 3 homolog
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C1orf171
  • Links
    NCBI Gene ID: 127253
    neXtProt AC: NX_Q6IPR3
    UniProt: Q6IPR3

  • Chr Location
    1p31.1; chr1:74733143-74766677 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 209584 NCBI Gene Model | MGI Sequence Detail 20593 C57BL/6J ±  kb
transcript NM_172474 RefSeq | MGI Sequence Detail 4404 C57BL/6  
polypeptide Q8BSA9 UniProt | EBI | MGI Sequence Detail 257 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 22
    cDNA 22

    Microarray probesets 1
References
more
  • Summaries
    All 19
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/18/2019
MGI 6.14
The Jackson Laboratory