A230072C01Rik Gene Detail

Summary

• Symbol
  A230072C01Rik
• Name
  RIKEN cDNA A230072C01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444644
  NCBI Gene: 320742
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:20827915-20853588 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 16.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  35 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444644	lncRNA gene	ChrX:20827886-20853590 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015775	unclassified non-coding RNA gene	ChrX:15864896-15895617 (+)
A/J	MGP_AJ_G0015752	unclassified non-coding RNA gene	ChrX:15945224-15972286 (+)
AKR/J	MGP_AKRJ_G0015714	unclassified non-coding RNA gene	ChrX:16497741-16524063 (+)
BALB/cJ	MGP_BALBcJ_G0015713	unclassified non-coding RNA gene	ChrX:15713698-15743110 (+)
C3H/HeJ	MGP_C3HHeJ_G0015533	unclassified non-coding RNA gene	ChrX:16082221-16107628 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016167	unclassified non-coding RNA gene	ChrX:16284026-16313175 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013891	unclassified non-coding RNA gene	ChrX:14200540-14218703 (+)
CAST/EiJ	MGP_CASTEiJ_G0015088	unclassified non-coding RNA gene	ChrX:15379199-15408183 (+)
CBA/J	MGP_CBAJ_G0015513	unclassified non-coding RNA gene	ChrX:17022877-17051170 (+)
DBA/2J	MGP_DBA2J_G0015611	unclassified non-coding RNA gene	ChrX:15748084-15772416 (+)
FVB/NJ	MGP_FVBNJ_G0015617	unclassified non-coding RNA gene	ChrX:15656309-15680920 (+)
LP/J	MGP_LPJ_G0015693	unclassified non-coding RNA gene	ChrX:16117885-16145000 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015640	unclassified non-coding RNA gene	ChrX:17284595-17310757 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016211	unclassified non-coding RNA gene	ChrX:15782284-15813516 (+)
PWK/PhJ	MGP_PWKPhJ_G0014870	unclassified non-coding RNA gene	ChrX:14947334-14972612 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014657	unclassified non-coding RNA gene	ChrX:15792313-15819028 (+)
WSB/EiJ	MGP_WSBEiJ_G0015192	unclassified non-coding RNA gene	ChrX:15649466-15670406 (+)

Homology

• Gene Tree
  A230072C01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  2

• Ensembl
  ENSMUSG00000086877 (Evidence)
• NCBI Gene
  320742

Representative Sequences			Length	Strain/Species
genomic	320742	NCBI Gene Model | MGI Sequence Detail	25674	C57BL/6J
transcript	NR_027446	RefSeq | MGI Sequence Detail	2041	C57BL/6

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for A230072C01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160696	ChrX:20827906-20827913 (+)	-5 bp
Tssr160697	ChrX:20828089-20828095 (+)	177 bp
Tssr160698	ChrX:20828334-20828374 (+)	439 bp