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Trappc11
Gene Detail
Symbol

Name
ID
Trappc11
trafficking protein particle complex 11
MGI:2444585
Synonyms
D030016E14Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 8
26.86 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr8:47490115-47533470 bp, - strand
From VEGA annotation of GRCm38

  43356 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11076  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: TRAPPC11
Gene Tree: Trappc11

Human
homologs
TRAPPC11, trafficking protein particle complex 11
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 60684
neXtProt AC: NX_Q7Z392

Human Synonyms: C4orf41, FOIGR, GRY, LGMD2S

Human Chr (Location): 4q35.1; chr4:183659267-183713594 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human TRAPPC11

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(3)
Incidental mutations (data from APF )
Interactions
Trappc11 interacts with 178 markers (Mir7-1, Mir15a, Mir17, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process transport, vesicle-mediated transport
Component Golgi apparatus
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(93)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase trappc11 ; ZFIN trappc11    NEW 
Molecular
reagents
All nucleic(93) cDNA(93)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000028479 (Evidence)
Ensembl Gene Model ENSMUSG00000038102 (Evidence)
Entrez Gene 320714 (Evidence)
UniGene 39461
DFCI TC1591312, TC1597753, TC1601070, TC1603031
DoTS DT.101322044, DT.101383855, DT.101721533, DT.87068577, DT.94307712
NIA Mouse Gene Index U029796
Consensus CDS Project CCDS22296.1
International Mouse Phenotyping Consortium Status Trappc11
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028479 VEGA Gene Model | MGI Sequence Detail 43356 C57BL/6J ±  kb
transcript OTTMUST00000070576 VEGA | MGI Sequence Detail 4332 Not Applicable 
polypeptide OTTMUSP00000035992 VEGA | MGI Sequence Detail 1133 Not Applicable 

For the selected sequences
All sequences(47) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(414 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR021773 Foie gras liver health family 1
InterPro IPR025876 Trafficking protein particle complex subunit 11, C-terminal domain
Protein Ontology PR:000031520 trafficking protein particle complex subunit 11
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
All references(24)
Other
accession IDs
MGI:2142812, MGI:2142898

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory