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Trappc11
Gene Detail
Symbol

Name
ID
Trappc11
trafficking protein particle complex 11
MGI:2444585
Synonyms
D030016E14Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 8
26.86 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr8:47490115-47533470 bp, - strand
From VEGA annotation of GRCm38

  43356 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11076  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Trappc11

Human
homologs
Human Homolog TRAPPC11, trafficking protein particle complex 11
NCBI Gene ID 60684
neXtProt AC  NX_Q7Z392
Human Synonyms  C4orf41, FOIGR, GRY, LGMD2S
Human Chr (Location)  4q35.1; chr4:183659267-183713594 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human TRAPPC11
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(3)
Incidental mutations (data from APF )
Interactions
Trappc11 interacts with 178 markers (Mir7-1, Mir15a, Mir17, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process transport, vesicle-mediated transport
Component Golgi apparatus
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(93)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(93) cDNA(93)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000028479 (Evidence)
Ensembl Gene ModelENSMUSG00000038102 (Evidence)
Entrez Gene320714 (Evidence)
UniGene39461
DFCITC1603031, TC1601070, TC1597753, TC1591312
DoTSDT.87068577, DT.101721533, DT.101383855, DT.101322044, DT.94307712
NIA Mouse Gene IndexU029796
Consensus CDS ProjectCCDS22296.1
International Mouse Knockout Project StatusTrappc11
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028479 VEGA Gene Model | MGI Sequence Detail 43356 C57BL/6J ±  kb
transcript OTTMUST00000070576 VEGA | MGI Sequence Detail 4332 Not Applicable 
polypeptide OTTMUSP00000035992 VEGA | MGI Sequence Detail 1133 Not Applicable 

For the selected sequences
All sequences(47) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(414 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR021773 Foie gras liver health family 1
InterPro IPR025876 Trafficking protein particle complex subunit 11, C-terminal domain
Protein Ontology PR:000031520 trafficking protein particle complex subunit 11
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
All references(25)
Other
accession IDs
MGI:2142812, MGI:2142898

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory