B930095G15Rik Gene Detail

Summary

• Symbol
  B930095G15Rik
• Name
  RIKEN cDNA B930095G15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443701
  NCBI Gene: 320268
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:121486118-121491383 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 64.89 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443701	lncRNA gene	Chr14:121486118-121491383 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036912	sense intronic lncRNA gene	Chr14:119032463-119037778 (+)
A/J	MGP_AJ_G0036900	sense intronic lncRNA gene	Chr14:114451517-114456794 (+)
AKR/J	MGP_AKRJ_G0036847	sense intronic lncRNA gene	Chr14:118151171-118156444 (+)
BALB/cJ	MGP_BALBcJ_G0036891	sense intronic lncRNA gene	Chr14:114988241-114993506 (+)
C3H/HeJ	MGP_C3HHeJ_G0036576	sense intronic lncRNA gene	Chr14:118044655-118049914 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037404	sense intronic lncRNA gene	Chr14:123633432-123638693 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034464	sense intronic lncRNA gene	Chr14:110347974-110352432 (+)
CAST/EiJ	MGP_CASTEiJ_G0035765	sense intronic lncRNA gene	Chr14:115931661-115936943 (+)
CBA/J	MGP_CBAJ_G0036551	sense intronic lncRNA gene	Chr14:128331436-128336703 (+)
DBA/2J	MGP_DBA2J_G0036728	sense intronic lncRNA gene	Chr14:114323342-114328604 (+)
FVB/NJ	MGP_FVBNJ_G0036679	sense intronic lncRNA gene	Chr14:112650728-112656155 (+)
LP/J	MGP_LPJ_G0036774	sense intronic lncRNA gene	Chr14:119996839-120002095 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036685	sense intronic lncRNA gene	Chr14:133360973-133366299 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037520	sense intronic lncRNA gene	Chr14:117703645-117708915 (+)
PWK/PhJ	MGP_PWKPhJ_G0035459	sense intronic lncRNA gene	Chr14:111361949-111367208 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035270	sense intronic lncRNA gene	Chr14:113913392-113918643 (+)
WSB/EiJ	MGP_WSBEiJ_G0035965	sense intronic lncRNA gene	Chr14:118413021-118418282 (+)

Homology

• Gene Tree
  B930095G15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving B930095G15Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085133 (Evidence)
• NCBI Gene
  320268

Representative Sequences			Length	Strain/Species
genomic	320268	NCBI Gene Model | MGI Sequence Detail	5266	C57BL/6J
transcript	NR_155502	RefSeq | MGI Sequence Detail	5266	C57BL/6
polypeptide	Q8C3S9	UniProt | EBI | MGI Sequence Detail	194	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for B930095G15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127284	Chr14:121486141-121486145 (+)	25 bp
Tssr127285	Chr14:121490554-121490565 (+)	4,442 bp