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Gatad2b
Gene Detail
Symbol

Name
ID
Gatad2b
GATA zinc finger domain containing 2B
MGI:2443225
Synonyms
C430014D17Rik, p66beta
Feature Type
protein coding gene
Genetic Map
Chromosome 3
39.21 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr3:90341654-90358120 bp, + strand
From Ensembl annotation of GRCm38

  16467 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32484  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: GATAD2B
Gene Tree: Gatad2b

Human
homologs
GATAD2B, GATA zinc finger domain containing 2B
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 57459
neXtProt AC: NX_Q8WXI9

Human Synonyms: MRD18, P66beta, p68

Human Chr (Location): 1q21.3; chr1:153804725-153922975 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human GATAD2B

Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(8) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Gatad2b interacts with 59 markers (Mir10a, Mir10b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process ATP-dependent chromatin remodeling, regulation of transcription, DNA-templated, ...
Component nuclear chromatin, nucleoplasm, ...
Function metal ion binding, nucleosomal DNA binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (32)    Tissues (23)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 24
RT-PCR 8
cDNA source data(14)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase gatad2b    NEW 
Molecular
reagents
All nucleic(15) cDNA(14) Primer pair(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000042390 (Evidence)
Entrez Gene 229542 (Evidence)
DFCI TC1601423, TC1601180, TC1616325, TC1606846, TC1585454, TC1594320
DoTS DT.94227974, DT.94227971, DT.97357984, DT.484710, DT.102534606
Consensus CDS Project CCDS17526.1
International Mouse Phenotyping Consortium Status Gatad2b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000042390 Ensembl Gene Model | MGI Sequence Detail 16467 C57BL/6J ±  kb
transcript ENSMUST00000049382 Ensembl | MGI Sequence Detail 1906 Not Applicable 
polypeptide ENSMUSP00000041370 Ensembl | MGI Sequence Detail 594 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(8) UniProt(4)
Polymorphisms
SNPs within 2kb(56 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000679 Zinc finger, GATA-type
InterPro IPR013088 Zinc finger, NHR/GATA-type
Protein Ontology PR:000007863 transcriptional repressor p66-beta
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:207814 Potts RC, et al., CHD5, a brain-specific paralog of Mi2 chromatin remodeling enzymes, regulates expression of neuronal genes. PLoS One. 2011;6(9):e24515
All references(30)
Other
accession IDs
MGI:3034967

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory