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Gatad2b
Gene Detail
Symbol

Name
ID
Gatad2b
GATA zinc finger domain containing 2B
MGI:2443225
Synonyms
C430014D17Rik, p66beta
Feature Type
protein coding gene
Genetic Map
Chromosome 3
39.21 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr3:90293184-90363407 bp, + strand
From VEGA annotation of GRCm38

  70224 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32484  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: GATAD2B
Gene Tree: Gatad2b

Human
homologs
GATAD2B, GATA zinc finger domain containing 2B
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 57459
neXtProt AC: NX_Q8WXI9

Human Synonyms: MRD18, P66beta, p68

Human Chr (Location): 1q21.3; chr1:153804725-153922975 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human GATAD2B

Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(8) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Gatad2b interacts with 59 markers (Mir10a, Mir10b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (20 annotations)
Process ATP-dependent chromatin remodeling, DNA methylation, ...
Component nuclear chromatin, nucleoplasm, ...
Function metal ion binding, nucleosomal DNA binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (32)    Tissues (23)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 24
RT-PCR 8
cDNA source data(14)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase gatad2b    NEW 
Molecular
reagents
All nucleic(15) cDNA(14) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000052659 (Evidence)
Ensembl Gene Model ENSMUSG00000042390 (Evidence)
Entrez Gene 229542 (Evidence)
DFCI TC1585454, TC1594320, TC1601180, TC1601423, TC1606846, TC1616325
DoTS DT.102534606, DT.484710, DT.94227971, DT.94227974, DT.97357984
Consensus CDS Project CCDS17526.1
International Mouse Phenotyping Consortium Status Gatad2b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000052659 VEGA Gene Model | MGI Sequence Detail 70224 C57BL/6J ±  kb
transcript OTTMUST00000132055 VEGA | MGI Sequence Detail 7485 Not Applicable 
polypeptide OTTMUSP00000070473 VEGA | MGI Sequence Detail 594 Not Applicable 

For the selected sequences
All sequences(54) RefSeq(8) UniProt(4)
Polymorphisms
SNPs within 2kb(160 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000679 Zinc finger, GATA-type
InterPro IPR013088 Zinc finger, NHR/GATA-type
Protein Ontology PR:000007863 transcriptional repressor p66-beta
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:207814 Potts RC, et al., CHD5, a brain-specific paralog of Mi2 chromatin remodeling enzymes, regulates expression of neuronal genes. PLoS One. 2011;6(9):e24515
All references(32)
Other
accession IDs
MGI:3034967

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory