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Terb1 Gene Detail
Summary
  • Symbol
    Terb1
  • Name
    telomere repeat binding bouquet formation protein 1
  • Synonyms
    4930532D21Rik, Ccdc79
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443187
    NCBI Gene: 320022
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:104446718-104509887 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 53.04 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    131 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443187
protein coding gene Chr8:104446718-104509910 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034011
protein coding gene Chr8:106585479-106648613 (-)
A/J MGP_AJ_G0033992
protein coding gene Chr8:102356388-102416165 (-)
AKR/J MGP_AKRJ_G0033918
protein coding gene Chr8:105331496-105393230 (-)
BALB/cJ MGP_BALBcJ_G0033985
protein coding gene Chr8:102580216-102642498 (-)
C3H/HeJ MGP_C3HHeJ_G0033697
protein coding gene Chr8:106036451-106094397 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034505
protein coding gene Chr8:110499110-110561168 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031448
protein coding gene Chr8:95641823-95692760 (-)
CAST/EiJ MGP_CASTEiJ_G0033024
protein coding gene Chr8:105584574-105644980 (-)
CBA/J MGP_CBAJ_G0033671
protein coding gene Chr8:114155601-114218946 (-)
DBA/2J MGP_DBA2J_G0033825
protein coding gene Chr8:101722566-101783238 (-)
FVB/NJ MGP_FVBNJ_G0033772
protein coding gene Chr8:100657792-100716858 (-)
LP/J MGP_LPJ_G0033916
protein coding gene Chr8:106783140-106843335 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033814
protein coding gene Chr8:117336747-117399127 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034523
protein coding gene Chr8:105274281-105337272 (-)
PWK/PhJ MGP_PWKPhJ_G0032726
protein coding gene Chr8:101132631-101190396 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032565
protein coding gene Chr8:104103262-104158054 (-)
WSB/EiJ MGP_WSBEiJ_G0033139
protein coding gene Chr8:105960174-106027852 (-)



Homology
more
  • Human Ortholog
    TERB1, telomere repeat binding bouquet formation protein 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TERB1, telomere repeat binding bouquet formation protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CCDC79
  • Links
    NCBI Gene ID: 283847
    neXtProt AC: NX_Q8NA31
    UniProt: Q8NA31

  • Chr Location
    16q22.1; chr16:66754410-66802801 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 18330
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TERB1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    17 phenotypes from 2 alleles in 2 genetic backgrounds
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Male and female mice homozygous for a null allele are infertile with arrest of meiosis.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 320022 NCBI Gene Model | MGI Sequence Detail 63170 C57BL/6J ±  kb
    transcript NM_180958 RefSeq | MGI Sequence Detail 2950 C57BL/6  
    polypeptide Q8C0V1 UniProt | EBI | MGI Sequence Detail 768 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 10
      Genomic 2
      cDNA 7
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2142826
    References
    more
    • Summaries
      All 29
      Developmental Gene Expression 3
      Gene Ontology 5
      Phenotypes 7
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:270644 Wang Y, et al., The meiotic TERB1-TERB2-MAJIN complex tethers telomeres to the nuclear envelope. Nat Commun. 2019 Feb 4;10(1):564

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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    last database update
    08/13/2019
    MGI 6.14
    The Jackson Laboratory