Gimap5 MGI Mouse Gene Detail - MGI:2442232 - GTPase, IMAP family member 5

Symbol

Gimap5
Name

GTPase, IMAP family member 5
Synonyms

E230026N22Rik

Feature Type

protein coding gene
IDs

MGI:2442232
NCBI Gene: 317757
Gene Overview

MyGene.info: GIMAP5
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr6:48746197-48754210 bp, + strand
From Ensembl annotation of GRCm38

View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 23.71 cM
Mapping Data

1 experiment

SNPs within 2kb

58 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442232	protein coding gene	Chr6:48746136-48754210 (.)
129S1/SvImJ	MGP_129S1SvImJ_G0030711	protein coding gene	Chr6:47703587-47712980 (+)
A/J	MGP_AJ_G0030682	protein coding gene	Chr6:45538551-45546650 (+)
AKR/J	MGP_AKRJ_G0030607	protein coding gene	Chr6:47136481-47147455 (+)
BALB/cJ	MGP_BALBcJ_G0030692	protein coding gene	Chr6:45869861-45878905 (+)
C3H/HeJ	MGP_C3HHeJ_G0030405	protein coding gene	Chr6:47147031-47155500 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0031147	protein coding gene	Chr6:48824847-48834575 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028354	protein coding gene	Chr6:43165672-43173796 (+)
CAST/EiJ	MGP_CASTEiJ_G0029809	protein coding gene	Chr6:46868143-46876592 (+)
CBA/J	MGP_CBAJ_G0030380	protein coding gene	Chr6:50846911-50856506 (+)
DBA/2J	MGP_DBA2J_G0030529	protein coding gene	Chr6:45454302-45461796 (+)
FVB/NJ	MGP_FVBNJ_G0030481	protein coding gene	Chr6:45087856-45096247 (+)
LP/J	MGP_LPJ_G0030614	protein coding gene	Chr6:47686526-47697892 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030515	protein coding gene	Chr6:53660461-53668328 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031176	protein coding gene	Chr6:47005157-47014199 (+)
PWK/PhJ	MGP_PWKPhJ_G0029521	protein coding gene	Chr6:44986528-44998212 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0029357	protein coding gene	Chr6:46350261-46358924 (+)
WSB/EiJ	MGP_WSBEiJ_G0029886	protein coding gene	Chr6:47005391-47014506 (+)

Human Ortholog

GIMAP1-GIMAP5, GIMAP1-GIMAP5 readthrough

Vertebrate Orthologs

11

Human Ortholog

GIMAP1-GIMAP5, GIMAP1-GIMAP5 readthrough
Orthology source: HomoloGene
Links

HGNC:51257

NCBI Gene ID: 100527949
Chr Location

7q36.1; chr7:150716557-150743649 (+) GRCh38.p7

Human Ortholog

GIMAP5, GTPase, IMAP family member 5
Orthology source: HGNC
Synonyms

HIMAP3, IAN4, IAN4L1, IAN5, IAN-5, IMAP3, IROD
Links

HGNC:18005

NCBI Gene ID: 55340

neXtProt AC: NX_Q96F15

UniProt: Q96F15
Chr Location

7q36.1; chr7:150737348-150743649 (+) GRCh38.p7

HomoloGene

Vertebrate Homology Class 41257
1 human;2 mouse;1 rat;1 chimpanzee;2 cattle;1 dog;2 chicken;1 macaque, rhesus
HCOP

human homology predictions: GIMAP1-GIMAP5, GIMAP5
Gene Tree

Gimap5

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Phenotype Summary

67 phenotypes from 2 alleles in 3 genetic backgrounds
2 phenotypes from multigenic genotypes
10 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

7
Chemically induced (ENU)

1
Targeted

6
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

8 strains or lines available

Mice homozygouse for a knock-out allele display defects in lymphocyte development with hematopoietic defects and reduced life span. Mice homozygous for an ENU-induced allele exhibit premature death associated with extramedullary hematopoiesis in the liver, anemia, cachexia, and colitis.

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All GO Annotations

11
GO References

5

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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cDNA Data

14

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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Gimap5 interacts with 128 markers (Mir7-1, Mir10a, Mir10b, ...) View All

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All Sequences

49
RefSeq

12
UniProt

1
CCDS

CCDS20114.1
UniGene

455917

Ensembl

ENSMUSG00000043505 (Evidence)
NCBI Gene

317757

			Length	Strain/Species	Flank
genomic	ENSMUSG00000043505	Ensembl Gene Model \| MGI Sequence Detail	8014	C57BL/6J	± kb
transcript	ENSMUST00000055558	Ensembl \| MGI Sequence Detail	1953	Not Applicable
polypeptide	ENSMUSP00000056820	Ensembl \| MGI Sequence Detail	308	Not Applicable

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UniProt

1 Sequence
InterPro Domains

IPR006703 AIG1-type guanine nucleotide-binding (G) domain

IPR027417 P-loop containing nucleoside triphosphate hydrolase

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All nucleic 14

cDNA 14

Microarray probesets 3

Summaries

All 31

Gene Ontology 5

Phenotypes 10
Earliest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Latest

J:260013 Patterson AR, et al., Gimap5-dependent inactivation of GSK3beta is required for CD4(+) T cell homeostasis and prevention of immune pathology. Nat Commun. 2018 Jan 30;9(1):430

TSS for Gimap5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56207	Chr6:48746169-48746180 (+)	-22 bp
Tssr56208	Chr6:48746188-48746212 (+)	3 bp
Tssr56209	Chr6:48746223-48746234 (+)	32 bp
Tssr56210	Chr6:48746237-48746302 (+)	73 bp
Tssr56211	Chr6:48746707-48746718 (+)	516 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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