D030028A08Rik Gene Detail

Summary

• Symbol
  D030028A08Rik
• Name
  RIKEN cDNA D030028A08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441931
  NCBI Gene: 319371
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:96834972-96855886 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 60.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  207 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441931	lncRNA gene	Chr11:96807096-96855886 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015199	unclassified non-coding RNA gene	Chr11:99283728-99338540 (+)
A/J	MGP_AJ_G0015173	unclassified non-coding RNA gene	Chr11:95210238-95273229 (+)
AKR/J	MGP_AKRJ_G0015136	unclassified non-coding RNA gene	Chr11:98163822-98226149 (+)
BALB/cJ	MGP_BALBcJ_G0015135	unclassified non-coding RNA gene	Chr11:95710187-95759561 (+)
C3H/HeJ	MGP_C3HHeJ_G0014959	unclassified non-coding RNA gene	Chr11:98286572-98339024 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015592	unclassified non-coding RNA gene	Chr11:102367230-102421537 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013335	unclassified non-coding RNA gene	Chr11:92687171-92736220 (+)
CAST/EiJ	MGP_CASTEiJ_G0014512	unclassified non-coding RNA gene	Chr11:99135654-99188815 (+)
CBA/J	MGP_CBAJ_G0014938	unclassified non-coding RNA gene	Chr11:106558298-106622727 (+)
DBA/2J	MGP_DBA2J_G0015031	unclassified non-coding RNA gene	Chr11:94772959-94823684 (+)
FVB/NJ	MGP_FVBNJ_G0015043	unclassified non-coding RNA gene	Chr11:94251524-94300681 (+)
LP/J	MGP_LPJ_G0015112	unclassified non-coding RNA gene	Chr11:99804915-99858969 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015069	unclassified non-coding RNA gene	Chr11:106501042-106555367 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015631	unclassified non-coding RNA gene	Chr11:98462697-98514975 (+)
PWK/PhJ	MGP_PWKPhJ_G0014304	unclassified non-coding RNA gene	Chr11:95741999-95793403 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014091	unclassified non-coding RNA gene	Chr11:98195638-98246218 (+)
WSB/EiJ	MGP_WSBEiJ_G0014615	unclassified non-coding RNA gene	Chr11:98372791-98427772 (+)

Homology

• Gene Tree
  D030028A08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  36
• Gene trapped
  35
• Targeted
  1
• Genomic Mutations
  1 involving D030028A08Rik
• Find Mice (IMSR)
  14 strains or lines available

Expression

• Assay Results
  672
• cDNA Data
  13

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000078700 (Evidence)
• NCBI Gene
  319371

Representative Sequences			Length	Strain/Species
genomic	319371	NCBI Gene Model | MGI Sequence Detail	20915	C57BL/6J
transcript	NR_003293	RefSeq | MGI Sequence Detail	2820	Not Specified

Molecular
Reagents

• All nucleic 14

  cDNA 14

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 9
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for D030028A08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104586	Chr11:96834968-96835048 (+)	36 bp
Tssr104587	Chr11:96835060-96835111 (+)	114 bp
Tssr104588	Chr11:96835112-96835125 (+)	147 bp