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Pgbd1 Gene Detail
Summary
  • Symbol
    Pgbd1
  • Name
    piggyBac transposable element derived 1
  • Synonyms
    4921509E05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2441675
    NCBI Gene: 319207
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:21421275-21441053 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 7.79 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    92 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2441675
protein coding gene Chr13:21421275-21441058 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020275
protein coding gene Chr13:18682858-18705261 (-)
A/J MGP_AJ_G0020231
protein coding gene Chr13:18276288-18295933 (-)
AKR/J MGP_AKRJ_G0020207
protein coding gene Chr13:18580210-18599901 (-)
BALB/cJ MGP_BALBcJ_G0020219
protein coding gene Chr13:18317071-18336748 (-)
C3H/HeJ MGP_C3HHeJ_G0020020
protein coding gene Chr13:18672612-18692326 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020663
protein coding gene Chr13:19348406-19372846 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018270
protein coding gene Chr13:16632300-16652584 (-)
CAST/EiJ MGP_CASTEiJ_G0019557
protein coding gene Chr13:18479806-18502141 (-)
CBA/J MGP_CBAJ_G0019984
protein coding gene Chr13:20015468-20038459 (-)
DBA/2J MGP_DBA2J_G0020105
protein coding gene Chr13:17914899-17934904 (-)
FVB/NJ MGP_FVBNJ_G0020087
protein coding gene Chr13:17577780-17598198 (-)
LP/J MGP_LPJ_G0020176
protein coding gene Chr13:18927081-18950456 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020125
protein coding gene Chr13:20406860-20428577 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020691
protein coding gene Chr13:18395654-18417338 (-)
PWK/PhJ MGP_PWKPhJ_G0019320
protein coding gene Chr13:17953839-17974002 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019126
protein coding gene Chr13:17409229-17430843 (-)
WSB/EiJ MGP_WSBEiJ_G0019614
protein coding gene Chr13:18478983-18500428 (-)



Homology
more
  • Human Ortholog
    PGBD1, piggyBac transposable element derived 1
  • Vertebrate Orthologs
    5
  • Human Ortholog
    PGBD1, piggyBac transposable element derived 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    dJ874C20.4, HUCEP-4, SCAND4
  • Links
    NCBI Gene ID: 84547
    neXtProt AC: NX_Q96JS3
    UniProt: Q96JS3

  • Chr Location
    6p22.1; chr6:28281537-28303681 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 319207 NCBI Gene Model | MGI Sequence Detail 19779 C57BL/6J ±  kb
transcript NM_001162919 RefSeq | MGI Sequence Detail 3301 C57BL/6  
polypeptide NP_001156391 RefSeq | MGI Sequence Detail 415 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR029526 PiggyBac transposable element-derived protein
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 3
References
more
  • Summaries
    All 35
    Gene Ontology 1
    Phenotypes 16
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/15/2019
MGI 6.14
The Jackson Laboratory