About   Help   FAQ
Pgbd1 Gene Detail
Summary
  • Symbol
    Pgbd1
  • Name
    piggyBac transposable element derived 1
  • Synonyms
    4921509E05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2441675
    NCBI Gene: 319207
Location & Maps
more
  • Sequence Map
    Chr13:21421275-21441058 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      19784 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 7.79 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    PGBD1, piggyBac transposable element derived 1
  • Vertebrate Orthologs
    5
  • Human Ortholog
    PGBD1, piggyBac transposable element derived 1
    Orthology source: HomoloGene
  • Synonyms
    dJ874C20.4, HUCEP-4, SCAND4
  • Links
    NCBI Gene ID: 84547
    neXtProt AC: NX_Q96JS3

  • Chr Location
    6p22.1; chr6:28281537-28302549 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Pgbd1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000413 VEGA Gene Model | MGI Sequence Detail 19784 C57BL/6J ±  kb
transcript OTTMUST00000083471 VEGA | MGI Sequence Detail 2642 Not Applicable  
polypeptide OTTMUSP00000044868 VEGA | MGI Sequence Detail 415 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    92 from dbSNP Build 142
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR029526 PiggyBac transposable element-derived protein
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 3
References
more
  • Summaries
    All 25
    Gene Ontology 1
    Phenotypes 13
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/22/2016
MGI 6.04
The Jackson Laboratory