About   Help   FAQ
Hydin
Gene Detail
Symbol

Name
ID
Hydin
HYDIN, axonemal central pair apparatus protein
MGI:2389007
Synonyms
1700034M11Rik, 4930545D19Rik, hy3, hy-3, hyrh
Feature Type
protein coding gene
Genetic Map
Chromosome 8
57.50 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr8:110266977-110610253 bp, + strand
From NCBI annotation of GRCm38

  343277 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:52118  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Hydin

Human
homologs
Human Homolog HYDIN, HYDIN, axonemal central pair apparatus protein
NCBI Gene ID 54768
neXtProt AC  NX_Q4G0P3
Human Synonyms  CILD5, HYDIN1, HYDIN2, PPP1R31
Human Chr (Location)  16q22.2; chr16:70807384-71230722 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human HYDIN
Mutations,
alleles, and
phenotypes
All mutations/alleles(9) : Gene trapped(3) Spontaneous(2) Targeted(3) Transgenic(1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a mutation in this gene develop hydrocephaly after birth. Symptoms develop after 3-5 days. Affected animals usually die before 2 months of age.
 
Phenotype Images(7)
Interactions
Hydin interacts with 208 markers (Mir1a-1, Mir1a-2, Mir9-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process brain development, cilium assembly, ...
Component cell projection
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (36)    Tissues (4)    Images (13)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 36
cDNA source data(4)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(7) Genomic(2) cDNA(5)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000059854 (Evidence)
Entrez Gene244653 (Evidence)
DFCITC1592965, TC1600621, TC1588015
DoTSDT.55248506, DT.91284276, DT.94155718, DT.94164236
NIA Mouse Gene IndexU009821, U030244
Consensus CDS ProjectCCDS40476.1
International Mouse Knockout Project StatusHydin
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 244653 NCBI Gene Model | MGI Sequence Detail 343277 C57BL/6J ±  kb
transcript NM_172916 RefSeq | MGI Sequence Detail 15783 Not Specified 
polypeptide Q80W93 UniProt | EBI | MGI Sequence Detail 5154 Not Applicable 

For the selected sequences
All sequences(24) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(1192 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000535 Major sperm protein
InterPro IPR008962 PapD-like
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
Protein Ontology PR:000008872 hydrocephalus-inducing protein
Graphical View of Protein Domain Structure
References
(Earliest) J:13035 Gruneberg H, Two new mutant genes in the house mouse. J Genet. 1943;45:22-28
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(38)
Other
accession IDs
MGD-MRK-11026, MGD-MRK-11029, MGI:1922491, MGI:1923961, MGI:2157966, MGI:3801607, MGI:96295

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
12/09/2014
MGI 5.20
The Jackson Laboratory