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Abca16
Gene Detail
Symbol

Name
ID
Abca16
ATP-binding cassette, sub-family A (ABC1), member 16
MGI:2388711
Feature Type
protein coding gene
Genetic Map
Chromosome 7
64.86 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr7:120409647-120544813 bp, + strand
From VEGA annotation of GRCm38

  135167 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:132942  Vertebrate Homology Class
1 mouse; 1 rat; 1 cattle; 1 dog

Gene Tree: Abca16

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Abca16 interacts with 342 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component cellular_component
Function ATP binding, nucleotide binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (20)    Tissues (12)    Tissue x Stage Matrix (view)
Assay TypeResults
Northern blot 8
RT-PCR 12
cDNA source data(3)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(4) cDNA(3) Primer pair(1)
Other database
links
VEGA Gene ModelOTTMUSG00000029808 (Evidence)
Ensembl Gene ModelENSMUSG00000051900 (Evidence)
Entrez Gene233810 (Evidence)
DoTSDT.101307939, DT.102545613
NIA Mouse Gene IndexU076184
International Mouse Knockout Project StatusAbca16
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029808 VEGA Gene Model | MGI Sequence Detail 135167 C57BL/6J ±  kb
transcript OTTMUST00000073993 VEGA | MGI Sequence Detail 5088 Not Applicable 
polypeptide OTTMUSP00000038373 VEGA | MGI Sequence Detail 1678 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(16) UniProt(5)
Polymorphisms
SNPs within 2kb(590 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003593 AAA+ ATPase domain
InterPro IPR026082 ABC transporter A, ABCA
InterPro IPR003439 ABC transporter-like
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
References
(Earliest) J:90094 Chen ZQ, et al., Three ATP-binding cassette transporter genes, Abca14, Abca15, and Abca16, form a cluster on mouse Chromosome 7F3. Mamm Genome. 2004 May;15(5):335-43
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(17)
Other
accession IDs
MGI:3041244

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory