Abca16
Gene Detail

Symbol Name ID

Abca16 ATP-binding cassette, sub-family A (ABC1), member 16 MGI:2388711

Feature Type

protein coding gene

Genetic Map

Chromosome 7

64.86 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr7:120409647-120544813 bp, + strand From VEGA annotation of GRCm38   135167 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

Gene Tree: Abca16

Alleles and phenotypes

All alleles(4) : Targeted(3) Gene trapped(1)

Gene Ontology (GO) classifications

All GO classifications: (4 annotations)

Process	biological_process
Component	cellular_component
Function	ATP binding, nucleotide binding

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (20)    Tissues (12)   
Theiler Stages: 10, 18, 23, 25, 28

Assay Type	Results
Northern blot	8
RT-PCR	12

cDNA source data(3)
External Resources: GEO   ArrayExpress

Molecular reagents

All nucleic(4) cDNA(3) Primer pair(1)

Other database links

VEGA Gene Model	OTTMUSG00000029808 (Evidence)
Ensembl Gene Model	ENSMUSG00000051900 (Evidence)
Entrez Gene	233810 (Evidence)
DFCI	TC1593303
DoTS	DT.101307939, DT.102545613
NIA Mouse Gene Index	U076184
International Mouse Knockout Project Status	Abca16

Sequences

Length	Strain/Species
genomic	OTTMUSG00000029808	VEGA Gene Model | MGI Sequence Detail	135167	C57BL/6J
transcript	OTTMUST00000073993	VEGA | MGI Sequence Detail	5088	Not Applicable
polypeptide	OTTMUSP00000038373	VEGA | MGI Sequence Detail	1678	Not Applicable

All sequences(29) RefSeq(2) UniProt(5)

Polymorphisms

SNPs(394 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR003593	AAA+ ATPase domain
InterPro	IPR026082	ABC transporter A, ABCA
InterPro	IPR003439	ABC transporter-like

References

(Earliest) J:90094 Chen ZQ, et al., Three ATP-binding cassette transporter genes, Abca14, Abca15, and Abca16, form a cluster on mouse Chromosome 7F3. Mamm Genome. 2004 May;15(5):335-43
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(18)

Other accession IDs

MGI:3041244