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Prkaa1 Gene Detail
Summary
  • Symbol
    Prkaa1
  • Name
    protein kinase, AMP-activated, alpha 1 catalytic subunit
  • Synonyms
    AMPKalpha1, C130083N04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2145955
    NCBI Gene: 105787
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:5173343-5211380 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 15, 1.99 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    175 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2145955
protein coding gene Chr15:5172641-5211380 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021692
protein coding gene Chr15:2049347-2089996 (+)
A/J MGP_AJ_G0021653
protein coding gene Chr15:2059593-2099124 (+)
AKR/J MGP_AKRJ_G0021631
protein coding gene Chr15:2033601-2075649 (+)
BALB/cJ MGP_BALBcJ_G0021660
protein coding gene Chr15:1983324-2023660 (+)
C3H/HeJ MGP_C3HHeJ_G0021436
protein coding gene Chr15:2060380-2099224 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022099
protein coding gene Chr15:2152713-2195227 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019636
protein coding gene Chr15:1797435-1834892 (+)
CAST/EiJ MGP_CASTEiJ_G0020952
protein coding gene Chr15:2047196-2086798 (+)
CBA/J MGP_CBAJ_G0021405
protein coding gene Chr15:2178963-2226862 (+)
DBA/2J MGP_DBA2J_G0021529
protein coding gene Chr15:1992544-2030765 (+)
FVB/NJ MGP_FVBNJ_G0021507
protein coding gene Chr15:1929880-1968679 (+)
LP/J MGP_LPJ_G0021597
protein coding gene Chr15:1984053-2024200 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021532
protein coding gene Chr15:2312112-2356248 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022122
protein coding gene Chr15:2044264-2087042 (+)
PWK/PhJ MGP_PWKPhJ_G0020695
protein coding gene Chr15:2008529-2050981 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020533
protein coding gene Chr15:2005462-2041151 (+)
WSB/EiJ MGP_WSBEiJ_G0021008
protein coding gene Chr15:1982687-2025219 (+)



Homology
more
  • Human Ortholog
    PRKAA1, protein kinase AMP-activated catalytic subunit alpha 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PRKAA1, protein kinase AMP-activated catalytic subunit alpha 1
  • Synonyms
    AMPK, AMPKa1, AMPK alpha 1
  • Links
    NCBI Gene ID: 5562
    neXtProt AC: NX_Q13131
    UniProt: Q13131

  • Chr Location
    5p13.1; chr5:40759389-40798374 (-)  GRCh38

Human Diseases
more
  • Diseases
    3 with human PRKAA1 associations

Human Disease Mouse Models
      
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    26 phenotypes from 1 allele in 3 genetic backgrounds
    7 phenotypes from multigenic genotypes
    219 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele show reduced muscle cell glucose uptake, anemia, reticulocytosis, splenomegaly, increased erythrocyte turnover and plasma erythropoietin levels, and female subfertility associated with decreased litter size, reduced ovulation rate and a hyperandrogenic response.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000050697 Ensembl Gene Model | MGI Sequence Detail 38038 C57BL/6J ±  kb
    transcript ENSMUST00000051186 Ensembl | MGI Sequence Detail 4655 Not Applicable  
    polypeptide ENSMUSP00000063166 Ensembl | MGI Sequence Detail 559 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 86
      cDNA 85
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2146014, MGI:2146120
    References
    more
    • Summaries
      All 440
      Developmental Gene Expression 43
      Gene Ontology 25
      Phenotypes 219
    • Earliest
      J:54164 Turnley AM, et al., Cellular distribution and developmental expression of AMP-activated protein kinase isoforms in mouse central nervous system. J Neurochem. 1999 Apr;72(4):1707-16
    • Latest
      J:344568 Xu P, et al., AMPK regulates homeostasis of invasion and viability in trophoblasts by redirecting glucose metabolism: Implications for pre-eclampsia. Cell Prolif. 2023 Feb;56(2):e13358

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    last database update
    03/12/2024
    MGI 6.23
    The Jackson Laboratory