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4933405O20Rik Gene Detail
Summary
  • Symbol
    4933405O20Rik
  • Name
    RIKEN cDNA 4933405O20 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:2142174
    NCBI Gene: 243996
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:50599190-50600528 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 32.53 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    21 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2142174
protein coding gene Chr7:50599190-50600530 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032303
protein coding gene Chr7:51291071-51292411 (+)
A/J MGP_AJ_G0032282
protein coding gene Chr7:50490520-50491860 (+)
AKR/J MGP_AKRJ_G0032218
protein coding gene Chr7:51703301-51704641 (+)
BALB/cJ MGP_BALBcJ_G0032294
protein coding gene Chr7:50158067-50159407 (+)
C3H/HeJ MGP_C3HHeJ_G0032007
protein coding gene Chr7:52099381-52100721 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032787
protein coding gene Chr7:53619525-53620865 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029793
protein coding gene Chr7:53614740-53616080 (+)
CAST/EiJ MGP_CASTEiJ_G0031335
protein coding gene Chr7:43486406-43487746 (+)
CBA/J MGP_CBAJ_G0031972
protein coding gene Chr7:55404838-55406178 (+)
DBA/2J MGP_DBA2J_G0032129
protein coding gene Chr7:49703241-49704581 (+)
FVB/NJ MGP_FVBNJ_G0032083
protein coding gene Chr7:49644070-49645410 (+)
LP/J MGP_LPJ_G0032210
protein coding gene Chr7:52237729-52239069 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032120
protein coding gene Chr7:54509265-54510605 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032804
protein coding gene Chr7:50691669-50693009 (+)
PWK/PhJ MGP_PWKPhJ_G0031055
protein coding gene Chr7:43038414-43039754 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030896
protein coding gene Chr7:38893358-38894699 (+)
WSB/EiJ MGP_WSBEiJ_G0031453
protein coding gene Chr7:51368854-51370194 (+)



Homology
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Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 243996 NCBI Gene Model | MGI Sequence Detail 1339 C57BL/6J ±  kb
transcript NM_172901 RefSeq | MGI Sequence Detail 1339 C57BL/6  
polypeptide Q8BPC6 UniProt | EBI | MGI Sequence Detail 396 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000040293 isocitrate dehydrogenase [NAD] subunit gamma 2, mitochondrial
  • InterPro Domains
    IPR004434 Isocitrate dehydrogenase NAD-dependent
    IPR024084 Isopropylmalate dehydrogenase-like domain
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 5
References
more
  • Summaries
    All 20
    Gene Ontology 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/05/2019
MGI 6.14
The Jackson Laboratory