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Tmem40 Gene Detail
Summary
  • Symbol
    Tmem40
  • Name
    transmembrane protein 40
  • Synonyms
    9030407H20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2137870
    NCBI Gene: 94346
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:115729131-115762410 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 53.68 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    465 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2137870
 protein coding gene Chr6:115729131-115762466 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031153
 protein coding gene Chr6:118371086-118408831 (-)
A/J MGP_AJ_G0031123
 protein coding gene Chr6:113823280-113858526 (-)
AKR/J MGP_AKRJ_G0031053
 protein coding gene Chr6:116888228-116921044 (-)
BALB/cJ MGP_BALBcJ_G0031133
 protein coding gene Chr6:113634132-113669557 (-)
C3H/HeJ MGP_C3HHeJ_G0030575
 protein coding gene Chr6:67381494-67416025 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031592
 protein coding gene Chr6:121390842-121421050 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028756
 protein coding gene Chr6:110832084-110874503 (-)
CAST/EiJ MGP_CASTEiJ_G0030240
 protein coding gene Chr6:117249621-117288293 (-)
CBA/J MGP_CBAJ_G0030819
 protein coding gene Chr6:126157769-126194613 (-)
DBA/2J MGP_DBA2J_G0030973
 protein coding gene Chr6:112750804-112786816 (-)
FVB/NJ MGP_FVBNJ_G0030926
 protein coding gene Chr6:111928983-111964314 (-)
LP/J MGP_LPJ_G0031052
 protein coding gene Chr6:118383414-118415525 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030961
 protein coding gene Chr6:130335316-130379676 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031620
 protein coding gene Chr6:116906065-116938046 (-)
PWK/PhJ MGP_PWKPhJ_G0029956
 protein coding gene Chr6:111764734-111800629 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029784
 protein coding gene Chr6:115616469-115649059 (-)
WSB/EiJ MGP_WSBEiJ_G0030324
 protein coding gene Chr6:117166492-117203539 (-)



Homology
more
  • Human Ortholog
    TMEM40, transmembrane protein 40
  • Vertebrate Orthologs
    7
  • Human Ortholog
    TMEM40, transmembrane protein 40
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 55287
    neXtProt AC: NX_Q8WWA1
    UniProt: Q8WWA1

  • Chr Location
    3p25.2; chr3:12733530-12769457 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    26
  • Tissues
    7
  • cDNA Data
    25
  • Literature Summary
    2
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000059900 Ensembl Gene Model | MGI Sequence Detail 33280 C57BL/6J ±  kb
transcript ENSMUST00000112946 Ensembl | MGI Sequence Detail 1554 Not Applicable  
polypeptide ENSMUSP00000108568 Ensembl | MGI Sequence Detail 266 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR026181 Transmembrane protein 40
Molecular
Reagents
less
  • All nucleic 25
    cDNA 25

    Microarray probesets 4
Other
Accession IDs
less
MGI:2141619
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:67747 Thut CJ, et al., A large-scale in situ screen provides molecular evidence for the induction of eye anterior segment structures by the developing lens. Dev Biol. 2001 Mar 1;231(1):63-76
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
03/13/2019
MGI 6.13 		The Jackson Laboratory