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Tmem40 Gene Detail
Summary
  • Symbol
    Tmem40
  • Name
    transmembrane protein 40
  • Synonyms
    9030407H20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2137870
    NCBI Gene: 94346
Location & Maps
more
  • Sequence Map
    Chr6:115729131-115762410 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      33280 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 53.68 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    TMEM40, transmembrane protein 40
  • Vertebrate Orthologs
    7
  • Human Ortholog
    TMEM40, transmembrane protein 40
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 55287
    neXtProt AC: NX_Q8WWA1

  • Chr Location
    3p25.2; chr3:12733530-12769457 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    41
  • Gene trapped
    38
  • Spontaneous
    1
  • Targeted
    2
  • Genomic Mutations
    1 involving Tmem40
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024222 VEGA Gene Model | MGI Sequence Detail 33280 C57BL/6J ±  kb
transcript OTTMUST00000059275 VEGA | MGI Sequence Detail 1554 Not Applicable  
polypeptide OTTMUSP00000028822 VEGA | MGI Sequence Detail 266 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    465 from dbSNP Build 142
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000029814 transmembrane protein 40
  • InterPro Domains
    IPR026181 Transmembrane protein 40
Molecular
Reagents
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  • All nucleic 24
    cDNA 24

    Microarray probesets 4
Other
Accession IDs
less
MGI:2141619
References
more
  • Summaries
    All 26
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:67747 Thut CJ, et al., A large-scale in situ screen provides molecular evidence for the induction of eye anterior segment structures by the developing lens. Dev Biol. 2001 Mar 1;231(1):63-76
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
07/12/2016
MGI 6.04
The Jackson Laboratory