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Pcdhgb8 Pseudogene Detail
Summary
  • Symbol
    Pcdhgb8
  • Name
    protocadherin gamma subfamily B, 8
  • Feature Type
    polymorphic pseudogene
  • IDs
    MGI:1935200
    NCBI Gene: 93705
  • Member of
    Pcdhg cluster
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr18:37761801-37841870 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.63 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    761 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1935200
polymorphic pseudogene Chr18:37761801-37841873 (+)
129S1/SvImJ MGP_129S1SvImJ_G0009940
polymorphic pseudogene Chr18:36169377-36259974 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0010157
polymorphic pseudogene Chr18:37469332-37559699 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0009658
polymorphic pseudogene Chr18:35892309-35977831 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0009860
polymorphic pseudogene Chr18:34239946-34321588 (+)
LP/J MGP_LPJ_G0009937
polymorphic pseudogene Chr18:36239546-36321810 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0009826
polymorphic pseudogene Chr18:39842927-39929362 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0010128
polymorphic pseudogene Chr18:35741836-35837201 (+)
PWK/PhJ MGP_PWKPhJ_G0009579
polymorphic pseudogene Chr18:34734490-34819111 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0009762
polymorphic pseudogene Chr18:35646861-35737851 (+)



Homology
more
  • Human Ortholog
    PCDHGB3, protocadherin gamma subfamily B, 3
  • Vertebrate Orthologs
    3
  • Human Ortholog
    PCDHGB3, protocadherin gamma subfamily B, 3
    Orthology source: HomoloGene
  • Synonyms
    PCDH-GAMMA-B3
  • Links
    NCBI Gene ID: 56102
    neXtProt AC: NX_Q9Y5G1
    UniProt: Q9Y5G1

  • Chr Location
    5q31.3; chr5:141370264-141512979 (+)  GRCh38.p7

  • Human Ortholog
    PCDHGB8P, protocadherin gamma subfamily B, 8 pseudogene
    Orthology source: HGNC
  • Synonyms
    PCDH-PSI3
  • Links
    NCBI Gene ID: 56120

  • Chr Location
    5q31.3; chr5:141426286-141428258 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000103081 Ensembl Gene Model | MGI Sequence Detail 80070 C57BL/6J ±  kb
transcript ENSMUST00000195764 Ensembl | MGI Sequence Detail 4615 Not Applicable  
polypeptide ENSMUSP00000142272 Ensembl | MGI Sequence Detail 931 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    Genomic 2
    cDNA 2
References
more
  • Summaries
    All 14
    Developmental Gene Expression 2
    Gene Ontology 1
  • Earliest
    J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
  • Latest
    J:195283 Ledderose J, et al., Maturation of postnatally generated olfactory bulb granule cells depends on functional gamma-protocadherin expression. Sci Rep. 2013;3:1514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/14/2019
MGI 6.14
The Jackson Laboratory