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Armc9 Gene Detail
Summary
  • Symbol
    Armc9
  • Name
    armadillo repeat containing 9
  • Synonyms
    3830422A13Rik, 4831423D23Rik, 4930438O05Rik, 5730415N24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926045
    NCBI Gene: 78795
  • Gene Overview
    MyGene.info: ARMC9
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:86154780-86278284 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 43.94 cM, cytoband C5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    750 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926045
protein coding gene Chr1:86154729-86278284 (.)
129S1/SvImJ MGP_129S1SvImJ_G0016244
protein coding gene Chr1:87396273-87526936 (+)
A/J MGP_AJ_G0016225
protein coding gene Chr1:84161088-84289742 (+)
AKR/J MGP_AKRJ_G0016186
protein coding gene Chr1:86596169-86729093 (+)
BALB/cJ MGP_BALBcJ_G0016182
protein coding gene Chr1:84276668-84400128 (+)
C3H/HeJ MGP_C3HHeJ_G0016010
protein coding gene Chr1:86852195-86981342 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016638
protein coding gene Chr1:90721867-90851891 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014360
protein coding gene Chr1:78656444-78784539 (+)
CAST/EiJ MGP_CASTEiJ_G0015595
protein coding gene Chr1:86087782-86225285 (+)
CBA/J MGP_CBAJ_G0015986
protein coding gene Chr1:93539807-93670382 (+)
DBA/2J MGP_DBA2J_G0016089
protein coding gene Chr1:83469789-83596838 (+)
FVB/NJ MGP_FVBNJ_G0016088
protein coding gene Chr1:82514298-82646075 (+)
LP/J MGP_LPJ_G0016160
protein coding gene Chr1:88501109-88629769 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016114
protein coding gene Chr1:96825019-96951286 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016681
protein coding gene Chr1:86724139-86858798 (+)
PWK/PhJ MGP_PWKPhJ_G0015382
protein coding gene Chr1:82752254-82880784 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015162
protein coding gene Chr1:85703421-85830898 (+)
WSB/EiJ MGP_WSBEiJ_G0015659
protein coding gene Chr1:86369060-86500284 (+)



Homology
more
  • Human Ortholog
    ARMC9, armadillo repeat containing 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ARMC9, armadillo repeat containing 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ARM, JBTS30, KU-MEL-1, NS21
  • Links
    NCBI Gene ID: 80210
    neXtProt AC: NX_Q7Z3E5
    UniProt: Q7Z3E5

  • Chr Location
    2q37.1; chr2:231198546-231394991 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11847
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ARMC9
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with human ARMC9 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000062590 Ensembl Gene Model | MGI Sequence Detail 123505 C57BL/6J ±  kb
transcript ENSMUST00000113309 Ensembl | MGI Sequence Detail 3555 Not Applicable  
polypeptide ENSMUSP00000108934 Ensembl | MGI Sequence Detail 818 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 46
    cDNA 46

    Microarray probesets 8
Other
Accession IDs
less
MGI:1917791, MGI:1917934, MGI:1925985
References
more
  • Summaries
    All 30
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory