C030005K06Rik MGI Mouse Gene Detail - MGI:1925945

Symbol

C030005K06Rik
Name

RIKEN cDNA C030005K06 gene

Feature Type

lncRNA gene
IDs

MGI:1925945
NCBI Gene: 102635912
Alliance

gene page
Transcription Start Sites

1 TSS

Sequence Map

Chr18:50175797-50186911 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 18, 27.20 cM
Mapping Data

1 experiment

SNPs within 2kb

145 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925945	lncRNA gene	Chr18:50174680-50186911 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015365	unclassified non-coding RNA gene	Chr18:49060656-49071727 (-)
A/J	MGP_AJ_G0015339	unclassified non-coding RNA gene	Chr18:47205680-47216751 (-)
AKR/J	MGP_AKRJ_G0015303	unclassified non-coding RNA gene	Chr18:48515194-48526265 (-)
BALB/cJ	MGP_BALBcJ_G0015303	unclassified non-coding RNA gene	Chr18:47336029-47347088 (-)
C3H/HeJ	MGP_C3HHeJ_G0015127	unclassified non-coding RNA gene	Chr18:48645252-48656311 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015757	unclassified non-coding RNA gene	Chr18:50700815-50711913 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013498	unclassified non-coding RNA gene	Chr18:46906781-46917864 (-)
CAST/EiJ	MGP_CASTEiJ_G0014678	unclassified non-coding RNA gene	Chr18:48620577-48631661 (-)
CBA/J	MGP_CBAJ_G0015106	unclassified non-coding RNA gene	Chr18:52177872-52188931 (-)
DBA/2J	MGP_DBA2J_G0015201	unclassified non-coding RNA gene	Chr18:46847073-46858132 (-)
FVB/NJ	MGP_FVBNJ_G0015208	unclassified non-coding RNA gene	Chr18:46396548-46407599 (-)
LP/J	MGP_LPJ_G0015281	unclassified non-coding RNA gene	Chr18:49079034-49090105 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015234	unclassified non-coding RNA gene	Chr18:53707949-53719008 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015796	unclassified non-coding RNA gene	Chr18:48479214-48490285 (-)
PWK/PhJ	MGP_PWKPhJ_G0014468	unclassified non-coding RNA gene	Chr18:46975530-46986732 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014255	unclassified non-coding RNA gene	Chr18:48705902-48718255 (-)
WSB/EiJ	MGP_WSBEiJ_G0014785	unclassified non-coding RNA gene	Chr18:48369622-48380695 (-)

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Gene Tree

C030005K06Rik

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Phenotype Summary

1 phenotype reference

All Mutations and Alleles

1
Spontaneous

1
Genomic Mutations

1 involving C030005K06Rik
Incidental Mutations

Mutagenetix
Find Mice (IMSR)

0 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

4

Tissue x Stage Matrix

Other Mouse Links

Expression Atlas

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All Sequences

28
RefSeq

1

Ensembl

ENSMUSG00000086600 (Evidence)
NCBI Gene

102635912

Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000086600	Ensembl Gene Model \| MGI Sequence Detail	11115	C57BL/6J	± kb
	transcript	ENSMUST00000129164	Ensembl \| MGI Sequence Detail	2076	Not Applicable

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All nucleic 7

cDNA 7

Summaries

All 9

Phenotypes 1
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for C030005K06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153298	Chr18:50186715-50186729 (-)	189 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/09/2024 MGI 6.23