About   Help   FAQ
Slc18b1
Gene Detail
Symbol

Name
ID
Slc18b1
solute carrier family 18, subfamily B, member 1
MGI:1923556
Synonyms
1110021L09Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 10
11.12 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr10:23796986-23827968 bp, + strand
From VEGA annotation of GRCm38

  30983 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:33473  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC18B1
Gene Tree: Slc18b1

Human
homologs
SLC18B1, solute carrier family 18, subfamily B, member 1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 116843
neXtProt AC: NX_Q6NT16

Human Synonyms: C6orf192, dJ55C23.6

Human Chr (Location): 6q22.3-q23.3; chr6:132769368-132804931 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(14) : Gene trapped(13) Targeted(1)
Incidental mutations (data from APF )
Interactions
Slc18b1 interacts with 153 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process transmembrane transport, transport
Component integral component of membrane, membrane
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (2)    Tissues (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 2
cDNA source data(23)
Other mouse links: GEO   Expression Atlas
Other vertebrate links: Xenbase slc18b1 ; ZFIN slc18b1    NEW 
Molecular
reagents
All nucleic(24) cDNA(23) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000030782 (Evidence)
Ensembl Gene Model ENSMUSG00000037455 (Evidence)
Entrez Gene 76306 (Evidence)
UniGene 294271
DFCI TC1584832, TC1641490, TC1647562, TC1729881
DoTS DT.110623879, DT.55227397
NIA Mouse Gene Index U011341
Consensus CDS Project CCDS48521.1
International Mouse Phenotyping Consortium Status Slc18b1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030782 VEGA Gene Model | MGI Sequence Detail 30983 C57BL/6J ±  kb
transcript OTTMUST00000076188 VEGA | MGI Sequence Detail 2837 Not Applicable 
polypeptide OTTMUSP00000040072 VEGA | MGI Sequence Detail 457 Not Applicable 

For the selected sequences
All sequences(55) RefSeq(6) UniProt(6)
Polymorphisms
SNPs within 2kb(110 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011701 Major facilitator superfamily
InterPro IPR020846 Major facilitator superfamily domain
Protein Ontology PR:000030969 MFS-type transporter SLC18B1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:152211 Coulpier F, et al., Novel features of boundary cap cells revealed by the analysis of newly identified molecular markers. Glia. 2009 Oct;57(13):1450-7
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/25/2015
MGI 6.0
The Jackson Laboratory