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1700013H16Rik
Gene Detail
Symbol

Name
ID
1700013H16Rik
RIKEN cDNA 1700013H16 gene
MGI:1922764
Synonyms
Slx2, Xlr6
Feature Type
protein coding gene
Genetic Map
Chromosome X
30.01 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
ChrX:53742901-53757831 bp, - strand
From VEGA annotation of GRCm38

  14931 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:133239  Vertebrate Homology Class
1 mouse; 1 rat

Gene Tree: 1700013H16Rik

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from CvDC )
Interactions
1700013H16Rik interacts with 58 markers (Mir7-1, Mir22, Mir96, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process spermatid development
Component chromatin, nucleolus, ...
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (70)    Tissues (20)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 20
Western blot 22
RT-PCR 28
cDNA source data(3)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(4) cDNA(3) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000017387 (Evidence)
Ensembl Gene Model ENSMUSG00000054727 (Evidence)
Entrez Gene 75514 (Evidence)
UniGene 116929
DFCI TC1590104
DoTS DT.60102505
NIA Mouse Gene Index U040094
Consensus CDS Project CCDS53071.1
International Mouse Phenotyping Consortium Status 1700013H16Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017387 VEGA Gene Model | MGI Sequence Detail 14931 C57BL/6J ±  kb
transcript OTTMUST00000042175 VEGA | MGI Sequence Detail 1224 Not Applicable 
polypeptide OTTMUSP00000018952 VEGA | MGI Sequence Detail 291 Not Applicable 

For the selected sequences
All sequences(18) RefSeq(6) UniProt(1)
Polymorphisms
SNPs within 2kb(28 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006888 Cor1/Xlr/Xmr family
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:200772 Shi YQ, et al., SYCP3-like X-linked 2 is expressed in meiotic germ cells and interacts with synaptonemal complex central element protein 2 and histone acetyltransferase TIP60. Gene. 2013 Sep 15;527(1):352-9
All references(24)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory