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Ccdc171 Gene Detail
Summary
  • Symbol
    Ccdc171
  • Name
    coiled-coil domain containing 171
  • Synonyms
    4930418J05Rik, 4930473A06Rik, A330015D16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922152
    NCBI Gene: 320226
Location & Maps
more
  • Sequence Map
    Chr4:83525545-83864670 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      339126 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 39.46 cM, cytoband C3
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    CCDC171, coiled-coil domain containing 171
  • Vertebrate Orthologs
    11
  • Human Ortholog
    CCDC171, coiled-coil domain containing 171
    Orthology source: HGNC, HomoloGene
  • Synonyms
    bA536D16.1, bA778P13.1, C9orf93
  • Links
    NCBI Gene ID: 203238
    neXtProt AC: NX_Q6TFL3

  • Chr Location
    9p22.3; chr9:15552874-15971899 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    42
  • Chemically induced (ENU)
    1
  • Chemically induced (other)
    2
  • Gene trapped
    38
  • Radiation induced
    1
  • Genomic Mutations
    3 involving Ccdc171
  • Incidental Mutations
    APF , CvDC
Mice that either homozygous or heterozygous for an ENU-induced single point mutation exhibit decreased mature B cell number, decreased IgD level, and increased IgM level.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000832 VEGA Gene Model | MGI Sequence Detail 339126 C57BL/6J ±  kb
transcript OTTMUST00000001630 VEGA | MGI Sequence Detail 4525 Not Applicable  
polypeptide OTTMUSP00000000773 VEGA | MGI Sequence Detail 1324 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    2031 from dbSNP Build 142
Protein
Information
less
  • UniProt
    9 Sequences
  • Protein Ontology
    PR:000031858 coiled-coil domain-containing protein 171
Molecular
Reagents
less
  • All nucleic 18
    Genomic 1
    cDNA 17

    Microarray probesets 3
Other
Accession IDs
less
MGI:1924120, MGI:2443621
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory