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Ccdc171 Gene Detail
Summary
  • Symbol
    Ccdc171
  • Name
    coiled-coil domain containing 171
  • Synonyms
    4930418J05Rik, 4930473A06Rik, A330015D16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922152
    NCBI Gene: 320226
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:83525545-83864670 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 39.46 cM, cytoband C3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2031 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922152
protein coding gene Chr4:83525400-83866143 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028405
protein coding gene Chr4:83131666-83469176 (+)
A/J MGP_AJ_G0028366
protein coding gene Chr4:80230496-80560893 (+)
AKR/J MGP_AKRJ_G0028315
protein coding gene Chr4:82328772-82663269 (+)
BALB/cJ MGP_BALBcJ_G0028386
protein coding gene Chr4:80465572-80801850 (+)
C3H/HeJ MGP_C3HHeJ_G0028101
protein coding gene Chr4:82926786-83270050 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028825
protein coding gene Chr4:86413866-86764313 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026125
protein coding gene Chr4:76186727-76536523 (+)
CAST/EiJ MGP_CASTEiJ_G0027542
protein coding gene Chr4:80833738-81178249 (+)
CBA/J MGP_CBAJ_G0028070
protein coding gene Chr4:89086454-89424375 (+)
DBA/2J MGP_DBA2J_G0028219
protein coding gene Chr4:80027228-80354333 (+)
FVB/NJ MGP_FVBNJ_G0028185
protein coding gene Chr4:79022263-79356544 (+)
LP/J MGP_LPJ_G0028319
protein coding gene Chr4:83497417-83829996 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028214
protein coding gene Chr4:94158315-94525274 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028862
protein coding gene Chr4:82382391-82709993 (+)
PWK/PhJ MGP_PWKPhJ_G0027265
protein coding gene Chr4:78368133-78706883 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027090
protein coding gene Chr4:79919362-80261945 (+)
WSB/EiJ MGP_WSBEiJ_G0027618
protein coding gene Chr4:82544471-82882276 (+)



Homology
more
  • Human Ortholog
    CCDC171, coiled-coil domain containing 171
  • Vertebrate Orthologs
    11
  • Human Ortholog
    CCDC171, coiled-coil domain containing 171
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA536D16.1, bA778P13.1, C9orf93
  • Links
    NCBI Gene ID: 203238
    neXtProt AC: NX_Q6TFL3
    UniProt: Q6TFL3

  • Chr Location
    9p22.3; chr9:15552874-16062431 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice that either homozygous or heterozygous for an ENU-induced single point mutation exhibit decreased mature B cell number, decreased IgD level, and increased IgM level.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000052407 Ensembl Gene Model | MGI Sequence Detail 339126 C57BL/6J ±  kb
    transcript ENSMUST00000231339 Ensembl | MGI Sequence Detail 4549 Not Applicable  
    polypeptide ENSMUSP00000155912 Ensembl | MGI Sequence Detail 1332 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 20
      Genomic 1
      cDNA 19

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1924120, MGI:2443621
    References
    more
    • Summaries
      All 30
      Developmental Gene Expression 1
      Phenotypes 8
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    03/13/2019
    MGI 6.13
    The Jackson Laboratory