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Manf Gene Detail
Summary
  • Symbol
    Manf
  • Name
    mesencephalic astrocyte-derived neurotrophic factor
  • Synonyms
    3230402M22Rik, Armet
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922090
    NCBI Gene: 74840
  • Gene Overview
    MyGene.info: MANF
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:106887415-106891938 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 57.98 cM, cytoband F1
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    137 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922090
protein coding gene Chr9:106838312-106891979 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035245
protein coding gene Chr9:108682559-108742228 (-)
A/J MGP_AJ_G0035224
protein coding gene Chr9:104738594-104793279 (-)
AKR/J MGP_AKRJ_G0035156
protein coding gene Chr9:107340517-107395628 (-)
BALB/cJ MGP_BALBcJ_G0035218
protein coding gene Chr9:104420377-104473731 (-)
C3H/HeJ MGP_C3HHeJ_G0034928
protein coding gene Chr9:107759224-107812800 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035738
protein coding gene Chr9:111664054-111722906 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032636
protein coding gene Chr9:102217705-102269064 (-)
CAST/EiJ MGP_CASTEiJ_G0034239
protein coding gene Chr9:107685283-107739997 (-)
CBA/J MGP_CBAJ_G0034896
protein coding gene Chr9:115641265-115700265 (-)
DBA/2J MGP_DBA2J_G0035057
protein coding gene Chr9:104191257-104248152 (-)
FVB/NJ MGP_FVBNJ_G0035005
protein coding gene Chr9:102977444-103031512 (-)
LP/J MGP_LPJ_G0035133
protein coding gene Chr9:108892158-108947634 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035044
protein coding gene Chr9:117197185-117254819 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035759
protein coding gene Chr9:107612107-107675569 (-)
PWK/PhJ MGP_PWKPhJ_G0033946
protein coding gene Chr9:104509415-104563936 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033781
protein coding gene Chr9:107686658-107745220 (-)
WSB/EiJ MGP_WSBEiJ_G0034360
protein coding gene Chr9:107517867-107573478 (-)



Homology
more
  • Human Ortholog
    MANF, mesencephalic astrocyte derived neurotrophic factor
  • Vertebrate Orthologs
    8
  • Human Ortholog
    MANF, mesencephalic astrocyte derived neurotrophic factor
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ARMET, ARP
  • Links
    NCBI Gene ID: 7873
    neXtProt AC: NX_P55145
    UniProt: P55145

  • Chr Location
    3p21.2; chr3:51385237-51389397 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 4383
    1 human;1 mouse;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: MANF
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    26 phenotypes from 2 alleles in 4 genetic backgrounds
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous KO affects de novo protein synthesis in differentiating neuronal stem cells and pancreatic beta cells, disrupting the migration and neurite growth of developing cortical neurons and causing severe growth retardation and hyperglycemia.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 74840 NCBI Gene Model | MGI Sequence Detail 4524 C57BL/6J ±  kb
    transcript NM_029103 RefSeq | MGI Sequence Detail 868 C57BL/6  
    polypeptide Q9CXI5 UniProt | EBI | MGI Sequence Detail 179 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 199
      Genomic 4
      cDNA 195

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2142911, MGI:2142925, MGI:2154780
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 5
      Gene Ontology 5
      Phenotypes 9
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:255942 Tseng KY, et al., MANF Is Essential for Neurite Extension and Neuronal Migration in the Developing Cortex. eNeuro. 2017 Sep-Oct;4(5)

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory