About   Help   FAQ
Ctcflos Gene Detail
Summary
  • Symbol
    Ctcflos
  • Name
    CCCTC-binding factor (zinc finger protein)-like, opposite strand
  • Synonyms
    1300015D01Rik
  • Feature Type
    antisense lncRNA gene
  • IDs
    MGI:1921411
    NCBI Gene: 74161
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:173124749-173133204 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 95.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    130 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921411
antisense lncRNA gene Chr2:173110818-173133204 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003710
antisense lncRNA gene Chr2:179359397-179383848 (+)
A/J MGP_AJ_G0003691
antisense lncRNA gene Chr2:171818154-171843190 (+)
AKR/J MGP_AKRJ_G0003669
antisense lncRNA gene Chr2:177006551-177028830 (+)
BALB/cJ MGP_BALBcJ_G0003680
antisense lncRNA gene Chr2:172218914-172243299 (+)
C3H/HeJ MGP_C3HHeJ_G0003627
antisense lncRNA gene Chr2:177391940-177419770 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003819
antisense lncRNA gene Chr2:184529880-184554849 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003325
antisense lncRNA gene Chr2:165056268-165079308 (+)
CAST/EiJ MGP_CASTEiJ_G0003590
antisense lncRNA gene Chr2:178081467-178105665 (+)
CBA/J MGP_CBAJ_G0003624
antisense lncRNA gene Chr2:191427271-191457758 (+)
DBA/2J MGP_DBA2J_G0003631
antisense lncRNA gene Chr2:170915812-170939096 (+)
FVB/NJ MGP_FVBNJ_G0003653
antisense lncRNA gene Chr2:169532560-169555829 (+)
LP/J MGP_LPJ_G0003710
antisense lncRNA gene Chr2:179295130-179322056 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003641
antisense lncRNA gene Chr2:194363563-194387826 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003820
antisense lncRNA gene Chr2:177016244-177040839 (+)
PWK/PhJ MGP_PWKPhJ_G0003545
antisense lncRNA gene Chr2:170708521-170732423 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003488
antisense lncRNA gene Chr2:176013001-176040939 (+)
WSB/EiJ MGP_WSBEiJ_G0003625
antisense lncRNA gene Chr2:177972503-177994683 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 74161 NCBI Gene Model | MGI Sequence Detail 8456 C57BL/6J ±  kb
transcript NR_040321 RefSeq | MGI Sequence Detail 3476 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 1
References
more
  • Summaries
    All 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/10/2020
MGI 6.16
The Jackson Laboratory